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[184082_s_at]

Description F38A5.6 /REP_DB=WormBase Gene ID /WP=CE10036 /TR=Q94211 /GB=AAB09150.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.9
(-3)
A 		21.4
(3)
A 		5.7
(-2.1)
A 		7
(-1.7)
A 		19
B 3.4
(-3)
A 		7.5
(3)
A 		6.2
(1.1)
A 		5
(-0.7)
A 		4
C 4
(-2)
A 		6.7
(1)
A 		3.1
(-3)
A 		8.5
(3)
A 		5
avr 3.4
(-3) 		11.9
(3) 		5
(-1.9) 		6.8
(-0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 6.5
(-2.9)
A 		5.8
(-3)
A 		13.5
(-1.9)
A 		8.2
(-2.7)
A 		47.2
(2.7)
A 		49.5
(3)
A 		44
B 3.2
(-2.9)
A 		4.5
(-2.8)
A 		2.4
(-3)
A 		23.6
(-0.9)
A 		50.3
(1.7)
P 		64.1
(3)
M 		62
C 4
(-2.9)
A 		3.7
(-3)
A 		3.2
(-3)
A 		16.1
(-1.9)
A 		43.4
(0.4)
A 		73.7
(3)
P 		71
avr 4.6
(-3) 		4.7
(-3) 		6.4
(-2.8) 		16
(-1.8) 		47
(1.4) 		62.4
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.1
(-2.8)
A 		4.6
(3)
A 		1.5
(-2.2)
A 		1
(-3)
A 		4
B 1.1
(-3)
A 		1.9
(3)
A 		1.4
(-0.8)
A 		1.1
(-3)
A 		1
C 1.3
(-1.5)
A 		1.9
(3)
A 		1.1
(-3)
A 		1.4
(-0.8)
A 		1
avr 1.2
(-3) 		2.8
(3) 		1.3
(-2.6) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.1
(-2.6)
A 		2.9
(-2.2)
A 		2.1
(-2.6)
A 		14.2
(3)
A 		12
(2)
A 		13
B 1.1
(-2.9)
A 		1.5
(-2.8)
A 		0.6
(-3)
A 		6.3
(-1.5)
A 		20.4
(2.1)
P 		23.9
(3)
M 		23
C 1.5
(-2.8)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		3.2
(-2.4)
A 		14
(0.3)
A 		24.7
(3)
P 		24
avr 1.3
(-3) 		1.6
(-2.9) 		1.4
(-3) 		3.9
(-2.2) 		16.2
(1.7) 		20.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184082_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10617
Sequence Type Exemplar sequence
Representative Public ID F38A5.6 NCBI
Target Description F38A5.6 /REP_DB=WormBase Gene ID /WP=CE10036 /TR=Q94211 /GB=AAB09150.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068610 NCBI Caenorhabditis elegans F38A5.6 (F38A5.6) mRNA, complete cds. 11/11 None
SNAP00000010570 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6596146:6597287:-1 11/11 None
GENEFINDER00000010585 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6596146:6597620:-1 11/11 None
F38A5.6 ENSEMBL cdna:known chromosome:CEL140:IV:6596146:6597330:-1 gene:F38A5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6596151-6597336(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38A5.6
Entrez Gene 177421 Entrez gene
SwissProt Q94211 EMBL-EBI
WormBase CE10036 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6897 endocytosis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09150 Hypothetical protein F38A5.6 [Caenorhabditis elegans] ref|NP_501011.1| F38A5.6 [Caenorhabditis elegans] 1.0E-126
blast AAB09150 Hypothetical protein F38A5.6 [Caenorhabditis elegans] ref|NP_501011.1| F38A5.6 [Caenorhabditis elegans] 1.0E-124
blast CAA22251 Hypothetical protein W06D4.3 [Caenorhabditis elegans] ref|NP_492435.1| W06D4.3 [Caenorhabditis elegans] 4.0E-84
blast CAA22251 Hypothetical protein W06D4.3 [Caenorhabditis elegans] ref|NP_492435.1| W06D4.3 [Caenorhabditis elegans] 2.0E-82
blast CAA22251 Hypothetical protein W06D4.3 [Caenorhabditis elegans] ref|NP_492435.1| W06D4.3 [Caenorhabditis elegans] 4.0E-82
blast CAE73213 Hypothetical protein CBG20618 [Caenorhabditis briggsae] 3.0E-77
Sequence
Target Sequence 
>C. ELEGANS:184082_S_AT
aggaacatcgataagctcacctcctaccacaacttaatctacaaaattgtgaatgtaatc
gaacttcaagttcaattcatgcccaaggcaatggcaaagaaagcagttttgtgtgctccc
ggcgagaatccatgggaagttcttggaggatggttgaattatttgggaaaaaatcagttt
gatgggcaacattctaaaatgctggaaaaatacagtagcgcctgtggaagaattgctcaa
aaggagatccaggtgcagaaaagaactcgttctcatctgattaaaaagatgcgtttgtac
actggagaggaaagtgagatattgaattcgaacgtagaaaatttgaataacttgctccat
gcaatcgatgattctcgtcaccatgtgaagtcttcaaaaaccacgaaagaggtgaaagca
aaaggcgaaacgtatcgtaaagccatcaatgctttcaacgaaacggcaaatgaagttcaa
gcattgattgacgaagttgcaatggttgtcccacttcacgaaaatgaatttctgaagttt
tcacgtgaagcttcggtttaccacgacactgtacacaattctctgagcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAACATCGATAAGCTCACCTCCT 426 55 175 Antisense
CCTCCTACCACAACTTAATCTACAA 498 267 194 Antisense
TCAAGTTCAATTCATGCCCAAGGCA 69 631 240 Antisense
AGAAAGCAGTTTTGTGTGCTCCCGG 359 71 272 Antisense
TGCTCCCGGCGAGAATCCATGGGAA 648 555 288 Antisense
AGATGCGTTTGTACACTGGAGAGGA 369 65 461 Antisense
AAATTTGAATAACTTGCTCCATGCA 175 117 513 Antisense
AAACGTATCGTAAAGCCATCAATGC 354 127 602 Antisense
TTGCAATGGTTGTCCCACTTCACGA 233 703 671 Antisense
AAGCTTCGGTTTACCACGACACTGT 254 149 722 Antisense
ACACTGTACACAATTCTCTGAGCGA 272 111 740 Antisense
Sequence Source Affymetrix Proprietary Database