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[184081_at] 7TM chemoreceptor, srx family

Description T07H8.1 /REP_DB=WormBase Gene ID /WP=CE18222 /TR=O61897 /GB=AAC17678.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 18      6grp_cgc > 65      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 26.3
(-3)
P 		44.5
(-1.6)
A 		54.4
(-0.9)
A 		104.8
(3)
P 		79
B 35.1
(-0.9)
A 		51.3
(2.4)
A 		24.5
(-3)
A 		54.5
(3)
P 		30
C 47.8
(-0.9)
P 		45.2
(-1.1)
P 		22.8
(-3)
A 		93.9
(3)
P 		71
avr 36.4
(-2.7) 		47
(-1.4) 		33.9
(-3) 		84.4
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6
(-3)
A 		28.9
(0.2)
A 		43.2
(2.2)
M 		42.4
(2.1)
A 		48.9
(3)
P 		33.3
(0.8)
A 		43
B 24.3
(-3)
A 		47.5
(1.3)
A 		24.9
(-2.9)
A 		25.8
(-2.7)
A 		57
(3)
P 		25.5
(-2.8)
P 		33
C 3.2
(-3)
A 		51.3
(3)
P 		24.8
(-0.3)
A 		43.3
(2)
A 		31
(0.5)
P 		34
(0.8)
A 		48
avr 11.2
(-3) 		42.6
(2.5) 		31
(0.5) 		37.2
(1.5) 		45.6
(3) 		30.9
(0.4) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.6
(-3)
P 		9.7
(-2.9)
A 		14.2
(1.8)
A 		15.3
(3)
P 		6
B 11.2
(1.7)
A 		12.7
(3)
A 		5.7
(-3)
A 		11.6
(2.1)
P 		7
C 15.8
(3)
P 		13
(0.9)
P 		7.9
(-3)
A 		15.8
(3)
P 		8
avr 12.2
(0.6) 		11.8
(0.1) 		9.3
(-3) 		14.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.1
(-3)
A 		10.3
(1.1)
A 		9.4
(0.7)
M 		10.8
(1.3)
A 		14.7
(3)
P 		8.1
(0.1)
A 		14
B 8.5
(-2.1)
A 		15.8
(0.4)
A 		6
(-3)
A 		6.8
(-2.7)
A 		23.2
(3)
P 		9.5
(-1.8)
P 		17
C 1.2
(-3)
A 		15.7
(3)
P 		6.3
(-0.9)
A 		8.7
(0.1)
A 		10
(0.6)
P 		11.4
(1.2)
A 		15
avr 3.6
(-3) 		13.9
(2) 		7.2
(-1.3) 		8.8
(-0.5) 		16
(3) 		9.7
(-0) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184081_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11403
Sequence Type Exemplar sequence
Representative Public ID T07H8.1 NCBI
Target Description T07H8.1 /REP_DB=WormBase Gene ID /WP=CE18222 /TR=O61897 /GB=AAC17678.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072362 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-16) (srx-16) mRNA, complete cds. 11/11 None
GENEFINDER00000037167 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6978455:6980062:1 11/11 None
T07H8.1 ENSEMBL cdna:known chromosome:CEL140:V:6978940:6979980:1 gene:T07H8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037163 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6978940-6980063(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-16
Ensembl T07H8.1
Entrez Gene 188256 Entrez gene
SwissProt O61897 EMBL-EBI
WormBase CE36564 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504763 Serpentine Receptor, class X family member (srx-16) [Caenorhabditis elegans] gb|AAC17678.2| Serpentine receptor, class x protein 16 [Caenorhabditis elegans] 1.0E-151
blast NP_504763 Serpentine Receptor, class X family member (srx-16) [Caenorhabditis elegans] gb|AAC17678.2| Serpentine receptor, class x protein 16 [Caenorhabditis elegans] 1.0E-148
blast CAE72117 Hypothetical protein CBG19212 [Caenorhabditis briggsae] emb|CAE71978.1| Hypothetical protein CBG19053 [Caenorhabditis briggsae] 2.0E-96
blast CAE72117 Hypothetical protein CBG19212 [Caenorhabditis briggsae] emb|CAE71978.1| Hypothetical protein CBG19053 [Caenorhabditis briggsae] 2.0E-95
blast CAB03972 Hypothetical protein C47A10.8 [Caenorhabditis elegans] ref|NP_507493.2| Serpentine Receptor, class X family member (srx-18) [Caenorhabditis elegans] 2.0E-91
blast CAB03972 Hypothetical protein C47A10.8 [Caenorhabditis elegans] ref|NP_507493.2| Serpentine Receptor, class X family member (srx-18) [Caenorhabditis elegans] 4.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.1E-5
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504763.2 7 5-27,47-69,89-111,124-146,172-194,217-239,249-271
T07H8.1 7 5-27,47-69,89-111,124-146,172-194,217-239,249-271
GENEFINDER00000037167 7 46-68,88-110,130-152,165-187,213-235,258-280,290-312
Sequence
Target Sequence 
>C. ELEGANS:184081_AT
gcagtattcctgccttcgtattatgagagagtgtttagcccgtttggtacaaaagttatg
acatatataatttgggtggtttcaacaatctggtgtgtggtattatatgaaattgttgcc
tgtcattttaaatatgatgatgcttcttggtcacttgcatttttaccatcaaaaaaatgt
acgcggttaacatggtactctgattttacattcaatacttcactggttgttatgactctt
tgcactaacttgataacagcaatacaagctggaagaaaaagcagaatgctcatgaatgct
gctggaattcgaatgtcaaaacgacagagacaaagagaattaaatttcataaagcaaaca
ttttttcaaggaacaactattttcactggacaagttacatattacatcatagcaccattg
ctatccaactctattataattttcatcgttggaactttatgggcattcatgcatgcagtc
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTATTCCTGCCTTCGTATTATG 206 313 322 Antisense
TGAGAGAGTGTTTAGCCCGTTTGGT 341 567 345 Antisense
GGGTGGTTTCAACAATCTGGTGTGT 184 497 395 Antisense
GATGATGCTTCTTGGTCACTTGCAT 478 411 457 Antisense
GGTCACTTGCATTTTTACCATCAAA 35 505 470 Antisense
ACGCGGTTAACATGGTACTCTGATT 186 91 502 Antisense
CACTGGTTGTTATGACTCTTTGCAC 610 197 542 Antisense
GACTCTTTGCACTAACTTGATAACA 175 375 555 Antisense
GAATGCTCATGAATGCTGCTGGAAT 149 331 605 Antisense
TAGCACCATTGCTATCCAACTCTAT 340 651 731 Antisense
TATGGGCATTCATGCATGCAGTCGA 526 653 779 Antisense
Sequence Source Affymetrix Proprietary Database