[Home] | [Total List]

[184080_at]

Description T19B4.4 /REP_DB=WormBase Gene ID /WP=CE13742 /TR=P91454 /GB=AAB37632.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 52      6grp_total > 50      4grp_total > 57      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 679.3
(-0.3)
P 		667
(-0.6)
P 		829
(3)
P 		560
(-3)
P 		269
B 695.1
(-1.1)
P 		791
(0.6)
P 		921.8
(3)
P 		590.9
(-3)
P 		331
C 703.9
(-3)
P 		854
(3)
P 		740.9
(-1.5)
P 		734.8
(-1.8)
P 		150
avr 692.8
(-1.1) 		770.7
(1.2) 		830.6
(3) 		628.6
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 567.2
(-2.3)
P 		708.7
(-0.5)
P 		916.5
(2.2)
P 		979.4
(3)
P 		515.1
(-3)
P 		538.9
(-2.7)
P 		464
B 557.6
(-3)
P 		774.3
(0.5)
P 		925
(3)
P 		673
(-1.1)
P 		621.1
(-2)
P 		561.8
(-2.9)
P 		367
C 678.9
(-0.4)
P 		751.4
(0.6)
P 		759.9
(0.8)
P 		915.1
(3)
P 		500.2
(-3)
P 		636.7
(-1)
P 		415
avr 601.2
(-2) 		744.8
(0.7) 		867.1
(3) 		855.8
(2.8) 		545.5
(-3) 		579.1
(-2.4) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 247.3
(3)
P 		144.8
(-0.7)
P 		216.7
(1.9)
P 		82
(-3)
P 		165
B 221.7
(3)
P 		195.4
(1.4)
P 		213.6
(2.5)
P 		125.9
(-3)
P 		96
C 233
(1.9)
P 		245.5
(2.4)
P 		258.2
(3)
P 		123.9
(-3)
P 		134
avr 234
(3) 		195.2
(1.1) 		229.5
(2.8) 		110.6
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 104.6
(-3)
P 		252.1
(3)
P 		199.6
(0.9)
P 		248.4
(2.8)
P 		155.4
(-0.9)
P 		131.2
(-1.9)
P 		148
B 194
(-1.8)
P 		257.7
(3)
P 		224.6
(0.5)
P 		178.3
(-3)
P 		252.4
(2.6)
P 		209.5
(-0.6)
P 		79
C 251.7
(3)
P 		229.3
(1.5)
P 		193.4
(-0.9)
P 		184
(-1.5)
P 		161.9
(-3)
P 		213.1
(0.4)
P 		90
avr 183.4
(-3) 		246.4
(3) 		205.9
(-0.9) 		203.6
(-1.1) 		189.9
(-2.4) 		184.6
(-2.9) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1096
Sequence Type Exemplar sequence
Representative Public ID T19B4.4 NCBI
Target Description T19B4.4 /REP_DB=WormBase Gene ID /WP=CE13742 /TR=P91454 /GB=AAB37632.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059261 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-21) (dnj-21) mRNA, complete cds. 11/11 None
SNAP00000019536 ENSEMBL cdna:SNAP chromosome:CEL140:I:5676839:5677571:1 11/11 None
GENEFINDER00000019549 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5676839:5677571:1 11/11 None
T19B4.4.2 ENSEMBL cdna:known chromosome:CEL140:I:5676828:5677638:1 gene:T19B4.4 11/11 None
T19B4.4.1 ENSEMBL cdna:known chromosome:CEL140:I:5676830:5677650:1 gene:T19B4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5676838-5677571(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dnj-21
Ensembl T19B4.4
Entrez Gene 172231 Entrez gene
SwissProt P91454 EMBL-EBI
WormBase CE13742 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258716_AT DNAJ heat shock N-terminal domain-containing protein at
CANINE:1595306_AT similar to DNAJ domain-containing cfa
CANINE:1584717_S_AT similar to DNAJ domain-containing cfa
CANINE_2:CFA.7675.1.A1_AT similar to DNAJ domain-containing cfa
CANINE_2:CFA.7675.1.A1_S_AT similar to DNAJ domain-containing cfa
CHICKEN:GGA.5413.1.S1_AT DnaJ (Hsp40) homolog, subfamily C, member 15 gga
HU35KSUBC:RC_N94439_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HU35KSUBC:RC_AA459703_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-U133A:218435_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-U133_PLUS_2:218435_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-FOCUS:218435_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-U133A_2:218435_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
U133_X3P:G7019452_3P_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
U133_X3P:HS.45105.0.A1_3P_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-U133_PLUS_2:227808_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-U133B:227808_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-U95B:45614_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-U95B:52105_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
HG-U95C:56423_AT DnaJ (Hsp40) homolog, subfamily C, member 15 hs
MU11KSUBA:AA606762_S_AT DnaJ (Hsp40) homolog, subfamily C, member 15 mm
MG-U74AV2:97204_S_AT DnaJ (Hsp40) homolog, subfamily C, member 15 mm
MG-U74CV2:137210_F_AT DnaJ (Hsp40) homolog, subfamily C, member 15 mm
MOE430A:1416910_AT DnaJ (Hsp40) homolog, subfamily C, member 15 mm
MOUSE430A_2:1416910_AT DnaJ (Hsp40) homolog, subfamily C, member 15 mm
MOUSE430_2:1416910_AT DnaJ (Hsp40) homolog, subfamily C, member 15 mm
MU19KSUBC:TC36317_I_AT DnaJ (Hsp40) homolog, subfamily D, member 1, mRNA (cDNA clone MGC:41054 IMAGE:1364626) mm
RG-U34C:RC_AI179239_AT DnaJ (Hsp40) homolog, subfamily D, member 1 (predicted) rn
RAE230A:1373064_AT DnaJ (Hsp40) homolog, subfamily D, member 1 (predicted) rn
RAT230_2:1373064_AT DnaJ (Hsp40) homolog, subfamily D, member 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB37632 Dnaj domain (prokaryotic heat shock protein) protein 21 [Caenorhabditis elegans] ref|NP_491662.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-21) [Caenorhabditis elegans] 3.0E-46
blast CAE68935 Hypothetical protein CBG14915 [Caenorhabditis briggsae] 7.0E-41
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 0.017000000923872
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.4E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491662.1 1 4-23
T19B4.4.2 1 4-23
T19B4.4.1 1 4-23
SNAP00000019536 1 4-23
GENEFINDER00000019549 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:184080_AT
ttaattgttgccggtttgggtctcgctgcagtcggatttggagctcgatatgtccttcga
aatcaggcgcttattaaaaaaggaatggaggcgattccagttgctggtggagcttttagc
aactattatcgtggaggtttcgatcaaaagatgtcacgagccgaagcagcgaaaattttg
ggcgttgcgccgtcagcaaaaccggcgaaaattaaggaagctcataaaaaagtcatgatt
gtaaatcatccagatagaggaggatctccatatttggctgccaaaatcaacgaggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATTGTTGCCGGTTTGGGTCTCG 430 685 25 Antisense
GTCTCGCTGCAGTCGGATTTGGAGC 217 471 44 Antisense
GATTTGGAGCTCGATATGTCCTTCG 584 427 59 Antisense
ATGTCCTTCGAAATCAGGCGCTTAT 284 49 74 Antisense
GATTCCAGTTGCTGGTGGAGCTTTT 299 433 117 Antisense
GGAGCTTTTAGCAACTATTATCGTG 283 521 133 Antisense
AGATGTCACGAGCCGAAGCAGCGAA 5 69 173 Antisense
GCGAAAATTTTGGGCGTTGCGCCGT 637 277 193 Antisense
GCGTTGCGCCGTCAGCAAAACCGGC 184 289 206 Antisense
GGAGGATCTCCATATTTGGCTGCCA 152 517 283 Antisense
TTTGGCTGCCAAAATCAACGAGGCC 291 663 297 Antisense
Sequence Source Affymetrix Proprietary Database