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[184079_at]

Description R09B5.4 /REP_DB=WormBase Gene ID /WP=CE12624 /TR=O44607 /GB=AAB94213.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 61      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 153.5
(3)
A 		62.7
(-0.7)
A 		89.1
(0.4)
A 		6.7
(-3)
A 		147
B 108.4
(2.6)
P 		107.3
(2.5)
M 		115.5
(3)
A 		10.8
(-3)
A 		105
C 127.3
(3)
A 		110.7
(2.1)
A 		89.2
(0.8)
P 		21.7
(-3)
A 		106
avr 129.7
(3) 		93.6
(1.1) 		97.9
(1.4) 		13.1
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 125.4
(2.2)
M 		133.7
(3)
P 		118.4
(1.6)
A 		93.9
(-0.6)
M 		87.4
(-1.2)
A 		67.9
(-3)
A 		66
B 112.6
(1)
A 		144.5
(3)
P 		96.8
(0)
A 		81.4
(-0.9)
A 		111.5
(0.9)
M 		48.5
(-3)
A 		96
C 69.9
(-2.3)
A 		158.5
(3)
A 		137.4
(1.7)
A 		95.9
(-0.8)
A 		65.2
(-2.6)
A 		58.7
(-3)
A 		100
avr 102.6
(0) 		145.6
(3) 		117.5
(1.1) 		90.4
(-0.8) 		88
(-1) 		58.4
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 55.9
(3)
A 		13.6
(-1.6)
A 		23.3
(-0.6)
A 		1
(-3)
A 		55
B 34.6
(3)
P 		26.5
(1.5)
M 		26.8
(1.6)
A 		2.3
(-3)
A 		32
C 42.1
(3)
A 		31.8
(1.4)
A 		31.1
(1.3)
P 		3.7
(-3)
A 		38
avr 44.2
(3) 		24
(0.1) 		27.1
(0.6) 		2.3
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 23.1
(-1.7)
M 		47.6
(3)
P 		25.8
(-1.2)
A 		23.8
(-1.6)
M 		26.4
(-1.1)
A 		16.5
(-3)
A 		31
B 39.2
(1.2)
A 		48.1
(3)
P 		23.5
(-1.9)
A 		21.6
(-2.3)
A 		45.3
(2.4)
M 		18.1
(-3)
A 		30
C 25.9
(-1.6)
A 		48.4
(3)
A 		35
(0.2)
A 		19.3
(-3)
A 		21.1
(-2.6)
A 		19.7
(-2.9)
A 		29
avr 29.4
(-0.7) 		48
(3) 		28.1
(-1) 		21.6
(-2.3) 		30.9
(-0.4) 		18.1
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15733
Sequence Type Exemplar sequence
Representative Public ID R09B5.4 NCBI
Target Description R09B5.4 /REP_DB=WormBase Gene ID /WP=CE12624 /TR=O44607 /GB=AAB94213.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071021 NCBI Caenorhabditis elegans R09B5.4 (R09B5.4) mRNA, complete cds. 11/11 None
SNAP00000025912 ENSEMBL cdna:SNAP chromosome:CEL140:V:1460385:1464474:-1 11/11 None
GENEFINDER00000025921 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1461892:1464606:-1 11/11 None
R09B5.4 ENSEMBL cdna:known chromosome:CEL140:V:1461892:1464606:-1 gene:R09B5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1461891-1464606(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09B5.4
Entrez Gene 187727 Entrez gene
SwissProt O44607 EMBL-EBI
WormBase CE12624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503422 R09B5.4 [Caenorhabditis elegans] gb|AAB94213.1| Hypothetical protein R09B5.4 [Caenorhabditis elegans] 0.0
blast CAE62472 Hypothetical protein CBG06568 [Caenorhabditis briggsae] 0.0
blast CAE62471 Hypothetical protein CBG06567 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503422.1 9 128-150,155-177,211-229,234-256,285-307,327-349,356-378,428-450,487-509
R09B5.4 9 128-150,155-177,211-229,234-256,285-307,327-349,356-378,428-450,487-509
SNAP00000025912 7 90-112,168-190,220-242,262-284,291-313,363-385,422-444
GENEFINDER00000025921 9 128-150,155-177,211-229,234-256,285-307,327-349,356-378,428-450,487-509
Sequence
Target Sequence 
>C. ELEGANS:184079_AT
gcgatacagtgtcgccacttcaggactactgggattggttgttcagcagttttttgcggt
tctagcagttatatccgtgttcctcccgggatctcctatgaaccttggtggatactttgg
aaacttcactatgggaacttggtggcacgatatggttcactctttcgacgggaataacgc
tacaaacttggacccacatgttgattggaagcacttttcgtctgatggtgtcagtttggc
cagcatctttgtgttcttgattgcgattgcatccgcaagatatggattgtggtgcctgga
tctggctatcactcacataatgcaagtcaccatcccagaacgagaacgaaatacagtatt
cggaatgcacaacgcgttgtgccaaacgttctccgttttaaaagatgttctagtcattat
tctcccattaccggcaacttttgcaatttgtatatttatttcttacgggttcgtctcttg
tggtcatatgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATACAGTGTCGCCACTTCAGGA 708 289 1065 Antisense
TCTAGCAGTTATATCCGTGTTCCTC 576 611 1125 Antisense
GGGATCTCCTATGAACCTTGGTGGA 94 495 1152 Antisense
TATGGTTCACTCTTTCGACGGGAAT 178 651 1215 Antisense
AGTTTGGCCAGCATCTTTGTGTTCT 251 63 1297 Antisense
TGTGGTGCCTGGATCTGGCTATCAC 468 555 1352 Antisense
ATAATGCAAGTCACCATCCCAGAAC 602 25 1381 Antisense
CAACGCGTTGTGCCAAACGTTCTCC 413 187 1434 Antisense
GTTCTAGTCATTATTCTCCCATTAC 502 443 1471 Antisense
CTCCCATTACCGGCAACTTTTGCAA 422 233 1486 Antisense
GTTCGTCTCTTGTGGTCATATGTTC 374 441 1533 Antisense
Sequence Source Affymetrix Proprietary Database