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[184078_at]

Description C42C1.7 /REP_DB=WormBase Gene ID /WP=CE16913 /TR=O44963 /GB=AAB97548.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 147.6
(-1.1)
A 		195.3
(0.6)
A 		261.3
(3)
A 		94
(-3)
A 		167
B 182.9
(-2.5)
A 		168.4
(-3)
A 		349.3
(3)
P 		194.2
(-2.1)
A 		181
C 179.9
(-2.8)
A 		197.8
(-2.2)
A 		362
(3)
P 		174.2
(-3)
A 		188
avr 170.1
(-2.4) 		187.2
(-1.8) 		324.2
(3) 		154.1
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 152.1
(-2.1)
A 		173.4
(-0.6)
P 		218.7
(2.4)
P 		227.8
(3)
A 		163
(-1.3)
A 		138.2
(-3)
A 		90
B 183.7
(0.7)
A 		234.9
(3)
P 		220.2
(2.3)
P 		157.1
(-0.5)
A 		165.4
(-0.1)
A 		102.2
(-3)
A 		133
C 101
(-3)
A 		271.8
(2.5)
P 		141.4
(-1.7)
A 		288.4
(3)
A 		182.6
(-0.4)
A 		137.2
(-1.8)
A 		187
avr 145.6
(-1.8) 		226.7
(3) 		193.4
(1) 		224.4
(2.9) 		170.3
(-0.4) 		125.9
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 53.8
(1.4)
A 		42.4
(0.1)
A 		68.3
(3)
A 		13.8
(-3)
A 		55
B 58.3
(-0.4)
A 		41.6
(-3)
A 		80.9
(3)
P 		41.4
(-3)
A 		40
C 59.6
(-1.1)
A 		56.9
(-1.3)
A 		126.2
(3)
P 		29.4
(-3)
A 		97
avr 57.2
(-0.3) 		47
(-1.2) 		91.8
(3) 		28.2
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 28
(-3)
A 		61.7
(3)
P 		47.6
(0.5)
P 		57.8
(2.3)
A 		49.2
(0.8)
A 		33.7
(-2)
A 		34
B 63.9
(0.9)
A 		78.2
(3)
P 		53.5
(-0.7)
P 		41.6
(-2.5)
A 		67.2
(1.4)
A 		38.1
(-3)
A 		40
C 37.4
(-2.8)
A 		82.9
(3)
P 		36
(-3)
A 		58
(-0.2)
A 		59.1
(-0)
A 		45.9
(-1.7)
A 		47
avr 43.1
(-2.3) 		74.3
(3) 		45.7
(-1.9) 		52.5
(-0.7) 		58.5
(0.3) 		39.2
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9285
Sequence Type Exemplar sequence
Representative Public ID C42C1.7 NCBI
Target Description C42C1.7 /REP_DB=WormBase Gene ID /WP=CE16913 /TR=O44963 /GB=AAB97548.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069941(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069941 NCBI Caenorhabditis elegans C42C1.7 (C42C1.7) mRNA, complete cds. 10/11 A 
SNAP00000027946 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12297290:12301228:-1 10/11 None
GENEFINDER00000027948 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12297261:12301251:-1 10/11 None
C42C1.7 ENSEMBL cdna:known chromosome:CEL140:IV:12293212:12301251:-1 gene:C42C1.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12297708-12301234(-) 96.31 100.0
Public Domain and Genome References
Gene Title
Ensembl C42C1.7
Entrez Gene 178180 Entrez gene
SwissProt O44963 EMBL-EBI
WormBase CE29224 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_502342 C42C1.7 [Caenorhabditis elegans] gb|AAB97548.2| Hypothetical protein C42C1.7 [Caenorhabditis elegans] 0.0
blast CAE62223 Hypothetical protein CBG06274 [Caenorhabditis briggsae] 0.0
blast AAC48045 Hypothetical protein K09E10.2 [Caenorhabditis elegans] ref|NP_502345.1| K09E10.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502342.1 11 13-30,45-67,80-102,142-164,171-188,198-215,273-295,299-317,326-348,363-385,392-414
C42C1.7 11 13-30,45-67,80-102,142-164,171-188,198-215,273-295,299-317,326-348,363-385,392-414
SNAP00000027946 7 13-30,45-67,80-102,142-164,171-188,198-215,280-302
GENEFINDER00000027948 10 21-38,53-75,88-110,150-172,179-196,206-223,288-310,334-356,363-385,395-412
Sequence
Target Sequence 
>C. ELEGANS:184078_AT
gaatgcgtattggcagcgtactgatttaggtggactcgatgagccagggtgtgtatcaag
aacacctggaaaagtatggtgtgattatgaggaaaaaggaaaagatttcaaaattgccat
atttggaaacagtctcacattgaatcatcgtaaaatgttcttacaagaatgccggcatcg
ggcctacaatgttacaatgtattcagaatatggatgtgaaccattagctgctctatccaa
cgaagctcattgtaaacgtcatttaattgattttgttgactttttgaaaggtaccaagcc
agactatgcattcctttttaccagattctttgccaccggagtaccatttgagaaaaacga
taccaacttggaaaaggattcgacgtataaggagatgagaaatcaaatgaatcaattcat
tccaaatatcaaaaagaagcttttcgttttggatgcttttccaaggacaaataatcaata
cacgttgcaattggcaaaagatttgaaaaatggaattgatattaatgaaattcatgtaag
tcaacactatcacagacacaaaattctgcatttttcgctccaagaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGTATTGGCAGCGTACTGAT 322 331 1365 Antisense
GCGTACTGATTTAGGTGGACTCGAT 673 291 1380 Antisense
GGACTCGATGAGCCAGGGTGTGTAT 597 523 1396 Antisense
TACAAGAATGCCGGCATCGGGCCTA 274 637 1526 Antisense
GATGTGAACCATTAGCTGCTCTATC 32 409 1577 Antisense
GCTGCTCTATCCAACGAAGCTCATT 211 295 1591 Antisense
GTACCAAGCCAGACTATGCATTCCT 551 457 1655 Antisense
ATGCATTCCTTTTTACCAGATTCTT 396 43 1670 Antisense
TCTTTGCCACCGGAGTACCATTTGA 616 613 1691 Antisense
GCTTTTCGTTTTGGATGCTTTTCCA 401 303 1803 Antisense
TCTGCATTTTTCGCTCCAAGAACAC 331 609 1929 Antisense
Sequence Source Affymetrix Proprietary Database