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[184077_at]

Description F49E12.8 /REP_DB=WormBase Gene ID /WP=CE03384 /TR=Q20613 /GB=CAA91385.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 45      6grp_total > 80      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 68.5
(-3)
P 		67.9
(-3)
P 		100.4
(-1.5)
A 		198.1
(3)
P 		130
B 86.6
(1.2)
P 		101.8
(3)
P 		50.4
(-2.9)
A 		49.8
(-3)
P 		52
C 194.8
(3)
P 		119.9
(-0.5)
P 		67.9
(-3)
A 		121
(-0.5)
P 		127
avr 116.6
(2.2) 		96.5
(-0.2) 		72.9
(-3) 		123
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 62.4
(-3)
P 		68.3
(-2.5)
P 		99
(-0.4)
P 		146.8
(3)
M 		61.7
(-3)
A 		81.4
(-1.6)
M 		85
B 121.2
(3)
P 		57.9
(-2.2)
P 		48.8
(-3)
P 		109.1
(2)
P 		94.7
(0.8)
P 		85.8
(0.1)
P 		72
C 68.7
(-1.3)
P 		135.7
(3)
P 		79
(-0.7)
P 		77.9
(-0.7)
P 		43.2
(-3)
P 		92.4
(0.2)
P 		93
avr 84.1
(-0.6) 		87.3
(-0.2) 		75.6
(-1.8) 		111.3
(3) 		66.5
(-3) 		86.5
(-0.3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 24.9
(1.3)
P 		14.7
(-3)
P 		26.3
(1.9)
A 		29
(3)
P 		14
B 27.6
(3)
P 		25.1
(2.1)
P 		11.7
(-2.6)
A 		10.6
(-3)
P 		17
C 64.5
(3)
P 		34.5
(-1.1)
P 		23.7
(-2.6)
A 		20.4
(-3)
P 		44
avr 39
(3) 		24.8
(-1.5) 		20.6
(-2.8) 		20
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.5
(-3)
P 		24.3
(-0)
P 		21.6
(-0.6)
P 		37.2
(3)
M 		18.6
(-1.3)
A 		19.8
(-1.1)
M 		26
B 42.2
(3)
P 		19.3
(-1.5)
P 		11.8
(-3)
P 		28.9
(0.4)
P 		38.5
(2.3)
P 		32
(1)
P 		30
C 25.5
(-0.5)
P 		41.4
(3)
P 		20.1
(-1.7)
P 		15.7
(-2.6)
P 		14
(-3)
P 		30.9
(0.7)
P 		27
avr 26.4
(1.9) 		28.3
(3) 		17.8
(-3) 		27.3
(2.4) 		23.7
(0.4) 		27.6
(2.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3715
Sequence Type Exemplar sequence
Representative Public ID F49E12.8 NCBI
Target Description F49E12.8 /REP_DB=WormBase Gene ID /WP=CE03384 /TR=Q20613 /GB=CAA91385.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063364 NCBI Caenorhabditis elegans F49E12.8 (F49E12.8) mRNA, complete cds. 11/11 None
SNAP00000029998 ENSEMBL cdna:SNAP chromosome:CEL140:II:8392526:8394124:-1 11/11 None
GENEFINDER00000030007 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8392526:8394124:-1 11/11 None
F49E12.8 ENSEMBL cdna:known chromosome:CEL140:II:8392758:8394124:-1 gene:F49E12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8392754-8394121(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49E12.8
Entrez Gene 186060 Entrez gene
SwissProt Q20613 EMBL-EBI
WormBase CE03384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91385 Hypothetical protein F49E12.8 [Caenorhabditis elegans] ref|NP_495765.1| F49E12.8 [Caenorhabditis elegans] 1.0E-116
blast CAA91385 Hypothetical protein F49E12.8 [Caenorhabditis elegans] ref|NP_495765.1| F49E12.8 [Caenorhabditis elegans] 1.0E-112
blast CAE57656 Hypothetical protein CBG00646 [Caenorhabditis briggsae] 1.0E-108
blast CAE57656 Hypothetical protein CBG00646 [Caenorhabditis briggsae] 8.0E-73
Sequence
Target Sequence 
>C. ELEGANS:184077_AT
ggtatcgtgtgcatagtgctccaccaacttctgaaggaagaattccattaagtggaggaa
gacttccgccaattgtaaagaataaaagtgtagaacgtggaatatacatggagaagccaa
caactccagatcctgaacaagttcgacgagtacttgaacaacgaatagctcaagccctat
ccggaccttcatcacgtttgaaacatcaacaaacaagtagtgaagagcaacaaccatcag
catttatcgggagaagaagatcattgatacgatcagcggcaattggatctgaagaaatgc
acctggttccagttgatgatgatgaaatggccatgttacgaagcataaatcgatcacaat
attcaaagggatcaacagaaggatctactgcggagttttcatcggaatcgttgtataaac
acgagtatgaagataagtcatcagatgatgatgaagacttgacagttattcaacaattga
aaagtagaagaaagttaagcatggttcggcaagaagagcaggaagaactgactgcatcaa
tggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTATCGTGTGCATAGTGCTCCACC 399 505 74 Antisense
GGAAGACTTCCGCCAATTGTAAAGA 477 531 130 Antisense
GCCAACAACTCCAGATCCTGAACAA 539 277 189 Antisense
CAACGAATAGCTCAAGCCCTATCCG 463 187 232 Antisense
TCCGGACCTTCATCACGTTTGAAAC 176 595 253 Antisense
ACCATCAGCATTTATCGGGAGAAGA 327 87 306 Antisense
GATCATTGATACGATCAGCGGCAAT 461 419 332 Antisense
GAAGAAATGCACCTGGTTCCAGTTG 159 337 364 Antisense
GAAATGGCCATGTTACGAAGCATAA 394 361 397 Antisense
GGATCTACTGCGGAGTTTTCATCGG 504 511 454 Antisense
GGAAGAACTGACTGCATCAATGGAT 216 531 594 Antisense
Sequence Source Affymetrix Proprietary Database