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[184076_at]

Description C01G5.4 /REP_DB=WormBase Gene ID /WP=CE23512 /TR=Q17566 /GB=AAB37736.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 42.4
(-3)
A 		93.2
(0)
A 		72.5
(-1.2)
M 		143
(3)
M 		101
B 42.4
(-3)
A 		80.5
(3)
P 		59.7
(-0.3)
A 		43.2
(-2.9)
A 		38
C 78.1
(-2.6)
P 		83.4
(-2.2)
M 		71.3
(-3)
A 		163.6
(3)
P 		92
avr 54.3
(-3) 		85.7
(0) 		67.8
(-1.7) 		116.6
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 51.6
(-0.7)
A 		20.6
(-3)
A 		60.1
(-0)
P 		51.3
(-0.7)
A 		100.1
(3)
P 		79.6
(1.5)
A 		80
B 50.8
(-2.3)
P 		69.7
(-0.3)
A 		101.2
(3)
A 		43.9
(-3)
A 		88.2
(1.6)
P 		60.7
(-1.2)
P 		57
C 39.4
(-3)
A 		81.3
(1.3)
A 		68.2
(-0)
A 		82.4
(1.4)
A 		97.9
(3)
P 		77
(0.9)
P 		59
avr 47.3
(-3) 		57.2
(-1.8) 		76.5
(0.6) 		59.2
(-1.5) 		95.4
(3) 		72.4
(0.1) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.4
(-3)
A 		20.2
(2.2)
A 		18.9
(0.8)
M 		20.9
(3)
M 		6
B 13.5
(-0.6)
A 		19.9
(3)
P 		13.8
(-0.4)
A 		9.2
(-3)
A 		11
C 25.9
(0.2)
P 		24
(-3)
M 		24.9
(-1.5)
A 		27.6
(3)
P 		4
avr 18.3
(-3) 		21.4
(3) 		19.2
(-1.3) 		19.2
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 9.5
(-2.4)
A 		7.3
(-3)
A 		13.1
(-1.5)
P 		13
(-1.5)
A 		30.2
(3)
P 		19.4
(0.2)
A 		23
B 17.7
(-1.5)
P 		23.2
(-0.1)
A 		24.6
(0.2)
A 		11.6
(-3)
A 		35.8
(3)
P 		22.6
(-0.3)
P 		24
C 14.6
(-3)
A 		24.8
(0.6)
A 		17.3
(-2.1)
A 		16.6
(-2.3)
A 		31.7
(3)
P 		25.8
(0.9)
P 		17
avr 13.9
(-2.9) 		18.4
(-1.5) 		18.3
(-1.5) 		13.7
(-3) 		32.6
(3) 		22.6
(-0.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10370
Sequence Type Exemplar sequence
Representative Public ID C01G5.4 NCBI
Target Description C01G5.4 /REP_DB=WormBase Gene ID /WP=CE23512 /TR=Q17566 /GB=AAB37736.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068594 NCBI Caenorhabditis elegans C01G5.4 (C01G5.4) mRNA, complete cds. 11/11 None
SNAP00000022682 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6531827:6535599:1 11/11 None
GENEFINDER00000022689 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6531827:6535599:1 11/11 None
C01G5.4 ENSEMBL cdna:known chromosome:CEL140:IV:6531763:6535622:1 gene:C01G5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6531832-6535605(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G5.4
Entrez Gene 177414 Entrez gene
SwissProt Q17566 EMBL-EBI
WormBase CE23512 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37736 Hypothetical protein C01G5.4 [Caenorhabditis elegans] ref|NP_500995.1| C01G5.4 [Caenorhabditis elegans] 0.0
blast AAB37561 Hypothetical protein C09B9.7 [Caenorhabditis elegans] ref|NP_500712.1| C09B9.7 [Caenorhabditis elegans] 1.0E-166
blast CAA22059 Hypothetical protein Y113G7C.1 [Caenorhabditis elegans] ref|NP_507918.1| Y113G7C.1 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 8.2E-23
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 8.2E-23
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 8.2E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500995.1 1 927-949
C01G5.4 1 927-949
SNAP00000022682 1 944-966
GENEFINDER00000022689 1 891-913
Sequence
Target Sequence 
>C. ELEGANS:184076_AT
gattcgctagccttaattcacaattcaaagcggctccacttgcctttcaatcattccaca
cttccttggtgaaattattttcaactcaacagaagatcagagcttctcagaagatcggcg
gaggtggtggcaatgctggaagcagttccaaagaatgcaaatttccttttatacacgtca
tcgtttcaatggtgataacgctcattttggctgcccttgtgttcctggcatatctttgct
accgaaagaagaaacaagatgacaaaacaaaagaaaagactcgatacgaagatctactgg
cactaaaagtatatgatgaggccaggcagaaattggaggaaaaggagaaactggagagat
tgaagagcaaaagcaaggtaaacgaggacggaaaagccaaattggttgataagaatagga
tgaccccaattgcgaccccaatgaaagactccaacactcttcccggaactccaaacaacc
ttggaatcaccccgaagcagggaagtcttatgagaactggaatgactccagctgctacat
cgttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGCTAGCCTTAATTCACAATT 576 431 2624 Antisense
CAATTCAAAGCGGCTCCACTTGCCT 149 181 2644 Antisense
AATCATTCCACACTTCCTTGGTGAA 494 169 2672 Antisense
AATTTCCTTTTATACACGTCATCGT 457 173 2783 Antisense
TGGTGATAACGCTCATTTTGGCTGC 72 553 2813 Antisense
GTGTTCCTGGCATATCTTTGCTACC 571 485 2842 Antisense
GATACGAAGATCTACTGGCACTAAA 584 423 2906 Antisense
AGAATAGGATGACCCCAATTGCGAC 607 75 3035 Antisense
GCGACCCCAATGAAAGACTCCAACA 583 287 3055 Antisense
ACCTTGGAATCACCCCGAAGCAGGG 343 87 3101 Antisense
TGACTCCAGCTGCTACATCGTTGAA 99 571 3146 Antisense
Sequence Source Affymetrix Proprietary Database