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[184075_s_at]

Description C27A2.3 /REP_DB=WormBase Gene ID /WP=CE04103 /TR=Q18235 /GB=AAK31461.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 39      6grp_total > 87      4grp_total > 41      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 133.5
(-3)
A 		396.6
(3)
P 		351.1
(2)
P 		323.5
(1.3)
P 		263
B 180.5
(-3)
P 		273.3
(1.5)
P 		305
(3)
P 		249.9
(0.3)
P 		125
C 166.4
(-3)
P 		281.3
(0.3)
P 		378.3
(3)
P 		310.2
(1.1)
P 		212
avr 160.1
(-3) 		317.1
(2.1) 		344.8
(3) 		294.5
(1.4) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1242
1 2 3 4 5 6 range
A 132.3
(-3)
A 		176.7
(-2.8)
P 		212.7
(-2.6)
P 		212.1
(-2.6)
P 		637.6
(-0.5)
P 		1351.7
(3)
P 		1219
B 135
(-2.9)
A 		109.6
(-3)
A 		239.3
(-2.3)
P 		264.8
(-2.2)
P 		729
(0.2)
P 		1264.4
(3)
P 		1155
C 179.1
(-2.7)
P 		125.7
(-3)
A 		221.9
(-2.5)
P 		235.1
(-2.4)
P 		847.2
(0.9)
P 		1229.8
(3)
P 		1104
avr 148.8
(-2.9) 		137.3
(-3) 		224.6
(-2.5) 		237.3
(-2.5) 		737.9
(0.1) 		1282
(3) 		1145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 48.6
(-2.8)
A 		86.1
(2.2)
P 		91.8
(3)
P 		47.4
(-3)
P 		44
B 57.5
(-1.6)
P 		67.5
(1.9)
P 		70.7
(3)
P 		53.3
(-3)
P 		17
C 55.1
(-2.8)
P 		80.9
(-0.8)
P 		131.9
(3)
P 		52.3
(-3)
P 		80
avr 53.7
(-2.7) 		78.2
(0.5) 		98.1
(3) 		51
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 24.4
(-3)
A 		62.8
(-2.2)
P 		46.3
(-2.6)
P 		53.8
(-2.4)
P 		192.4
(0.3)
P 		329.1
(3)
P 		305
B 47
(-2.9)
A 		36.5
(-3)
A 		58.1
(-2.7)
P 		70.1
(-2.5)
P 		296.2
(0.6)
P 		471.5
(3)
P 		435
C 66.4
(-2.5)
P 		38.4
(-3)
A 		56.5
(-2.7)
P 		47.3
(-2.9)
P 		274.1
(0.8)
P 		411.7
(3)
P 		373
avr 45.9
(-3) 		45.9
(-3) 		53.6
(-2.9) 		57.1
(-2.8) 		254.2
(0.5) 		404.1
(3) 		358
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184075_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4443
Sequence Type Exemplar sequence
Representative Public ID C27A2.3 NCBI
Target Description C27A2.3 /REP_DB=WormBase Gene ID /WP=CE04103 /TR=Q18235 /GB=AAK31461.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062530 NCBI Caenorhabditis elegans Interactor of FizzY protein family member (ify-1) (ify-1) mRNA, complete cds. 11/11 None
SNAP00000044047 ENSEMBL cdna:SNAP chromosome:CEL140:II:5054245:5058097:-1 11/11 None
GENEFINDER00000044065 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5054245:5055139:-1 11/11 None
C27A2.3 ENSEMBL cdna:known chromosome:CEL140:II:5054123:5055163:-1 gene:C27A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5054242-5055137(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ify-1
Ensembl C27A2.3
Entrez Gene 173872 Entrez gene
SwissProt Q18235 EMBL-EBI
WormBase CE04103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494931 Interactor of FizzY protein family member (ify-1) [Caenorhabditis elegans] gb|AAK31461.1| Interactor of fizzy protein protein 1 [Caenorhabditis elegans] 1.0E-118
blast NP_494931 Interactor of FizzY protein family member (ify-1) [Caenorhabditis elegans] gb|AAK31461.1| Interactor of fizzy protein protein 1 [Caenorhabditis elegans] 1.0E-117
blast NP_494934 C27A2.4 [Caenorhabditis elegans] gb|AAK31462.1| Hypothetical protein C27A2.4 [Caenorhabditis elegans] 1.0E-104
blast CAA92657 Hypothetical protein F07H5.9 [Caenorhabditis elegans] ref|NP_495875.2| F07H5.9 [Caenorhabditis elegans] 1.0E-78
blast CAE59159 Hypothetical protein CBG02465 [Caenorhabditis briggsae] 4.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 2.0E-24
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 1.0E-5
Sequence
Target Sequence 
>C. ELEGANS:184075_S_AT
taaactcgtcaaaaactcctggcggaaaatcgcttcagagcttggcatcggcttgtaaag
tgccaccttcaaccaagaagaacactattccaattgcttttgaatgttatgaagatgaga
cagatgatcagattgccgatgtggccaccattaaaaagaccgaaaaacatccatgctctc
caatcgacactgcaaaccgatgtgaaacattcgattcgctagctgctgacattgaggacg
atatgcttaatttggaagatcaagacgtcgtactttctgaagatcggccatatggagacg
ttatcgatccggcagagtctgaagcagaagctcttgctgaattgggagtcgaggaatggg
actcatatccaccaattgatccagcttcaagaattggcgacgatttcaattatgtgctca
gaacagaggatttcgcggaagaaggtgatgtgaaactcgaagaaactcgccatcggactg
ttattgctgatattgatgaagtgaaaatgagtaaggctgaaagaaatgaactcttttcga
tgcttgcggacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACTCGTCAAAAACTCCTGGCGG 37 639 146 Antisense
AATCGCTTCAGAGCTTGGCATCGGC 177 169 173 Antisense
GGCTTGTAAAGTGCCACCTTCAACC 365 535 195 Antisense
TCAGATTGCCGATGTGGCCACCATT 660 623 273 Antisense
GACCGAAAAACATCCATGCTCTCCA 182 383 303 Antisense
CATTCGATTCGCTAGCTGCTGACAT 561 215 353 Antisense
GACGTCGTACTTTCTGAAGATCGGC 581 377 409 Antisense
GTTATCGATCCGGCAGAGTCTGAAG 305 447 445 Antisense
GGGACTCATATCCACCAATTGATCC 142 495 503 Antisense
CTCGCCATCGGACTGTTATTGCTGA 684 233 611 Antisense
AACTCTTTTCGATGCTTGCGGACGA 196 141 674 Antisense
Sequence Source Affymetrix Proprietary Database