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[184074_at]

Description C10A4.2 /REP_DB=WormBase Gene ID /WP=CE02470 /TR=Q17892 /GB=AAC46516.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 7.1
(-3)
A 		19
(0.9)
A 		12.1
(-1.4)
A 		25.5
(3)
A 		18
B 6.6
(-2.8)
A 		9.8
(-1.1)
A 		6.2
(-3)
A 		17.5
(3)
A 		11
C 2.3
(-3)
A 		9.4
(-1.4)
A 		25
(2.2)
A 		28.7
(3)
A 		26
avr 5.3
(-3) 		12.7
(-0.6) 		14.4
(-0.1) 		23.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 7.9
(-1.3)
A 		3
(-2.9)
A 		21.3
(3)
A 		4.6
(-2.4)
A 		3.5
(-2.7)
A 		2.7
(-3)
A 		19
B 4.4
(-3)
A 		13.2
(0.2)
A 		4.7
(-2.9)
A 		21.1
(3)
A 		7.4
(-1.9)
A 		15.5
(1)
A 		17
C 4.7
(-2.4)
A 		28.2
(1.8)
A 		34.8
(3)
A 		7.9
(-1.8)
A 		7.4
(-1.9)
A 		1.4
(-3)
A 		33
avr 5.7
(-3) 		14.8
(0.7) 		20.3
(3) 		11.2
(-0.7) 		6.1
(-2.8) 		6.5
(-2.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.6
(-3)
A 		4.1
(3)
A 		3.2
(-0.6)
A 		3.7
(1.4)
A 		2
B 2.1
(-1.2)
A 		2.4
(-0.4)
A 		1.4
(-3)
A 		3.7
(3)
A 		2
C 0.7
(-3)
A 		2.7
(-1.5)
A 		8.7
(3)
A 		4.8
(0.1)
A 		8
avr 1.8
(-3) 		3.1
(-0) 		4.4
(3) 		4.1
(2.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-1.8)
A 		1.1
(-2.4)
A 		4.6
(3)
A 		1.2
(-2.2)
A 		1.1
(-2.4)
A 		0.7
(-3)
A 		4
B 1.5
(-2.6)
A 		4.4
(1.2)
A 		1.2
(-3)
A 		5.6
(2.7)
A 		3
(-0.7)
A 		5.8
(3)
A 		5
C 1.7
(-2.1)
A 		8.6
(2.8)
A 		8.9
(3)
A 		1.6
(-2.2)
A 		2.4
(-1.6)
A 		0.5
(-3)
A 		8
avr 1.6
(-3) 		4.7
(2.6) 		4.9
(3) 		2.8
(-0.8) 		2.2
(-1.9) 		2.3
(-1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16553
Sequence Type Exemplar sequence
Representative Public ID C10A4.2 NCBI
Target Description C10A4.2 /REP_DB=WormBase Gene ID /WP=CE02470 /TR=Q17892 /GB=AAC46516.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076852 NCBI Caenorhabditis elegans C10A4.2 (C10A4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000027721 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7412375:7412695:1 11/11 None
SNAP00000027708 ENSEMBL cdna:SNAP chromosome:CEL140:X:7412441:7412695:1 11/11 None
C10A4.2 ENSEMBL cdna:known chromosome:CEL140:X:7412441:7412695:1 gene:C10A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7412439-7412694(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10A4.2
Entrez Gene 182483 Entrez gene
SwissProt Q17892 EMBL-EBI
WormBase CE02470 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46516 Hypothetical protein C10A4.2 [Caenorhabditis elegans] ref|NP_509253.1| C10A4.2 [Caenorhabditis elegans] 4.0E-40
blast AAC46516 Hypothetical protein C10A4.2 [Caenorhabditis elegans] ref|NP_509253.1| C10A4.2 [Caenorhabditis elegans] 5.0E-40
blast CAE65885 Hypothetical protein CBG11044 [Caenorhabditis briggsae] 9.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509253.1 1 5-22
C10A4.2 1 5-22
GENEFINDER00000027721 1 22-44
SNAP00000027708 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:184074_AT
gtctgctttttttgacatctgtcttgttattgctctcgtcattgtaaactatctgccgga
caccccagtatccaagtatcgtgttggcccaccacaaccagctgaatacatgagcgtttt
ggcaaatgtcaagcaagttgtcgcaaaaagcagaaatgcaagcagagtatctgttgttga
agctttcccaataggcgacctcatctcaaaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGCTTTTTTTGACATCTGTCTT 469 471 24 Antisense
GACATCTGTCTTGTTATTGCTCTCG 671 369 37 Antisense
GTTATTGCTCTCGTCATTGTAAACT 612 447 49 Antisense
CATTGTAAACTATCTGCCGGACACC 1 219 63 Antisense
TATCCAAGTATCGTGTTGGCCCACC 459 657 92 Antisense
CCACCACAACCAGCTGAATACATGA 672 273 112 Antisense
GAATACATGAGCGTTTTGGCAAATG 265 327 127 Antisense
GGCAAATGTCAAGCAAGTTGTCGCA 96 535 144 Antisense
GAGTATCTGTTGTTGAAGCTTTCCC 253 399 188 Antisense
TGAAGCTTTCCCAATAGGCGACCTC 649 573 201 Antisense
AATAGGCGACCTCATCTCAAAAGAA 500 167 213 Antisense
Sequence Source Affymetrix Proprietary Database