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[184073_at]

Description K07B1.1 /REP_DB=WormBase Gene ID /WP=CE11876 /TR=O01887 /GB=AAB54236.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 90      4grp_total > 23      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 58.9
(3)
P 		5.2
(-3)
A 		20.8
(-1.3)
A 		57.8
(2.9)
A 		54
B 113.3
(3)
P 		26.7
(-2.3)
A 		16
(-3)
A 		63.3
(-0.1)
P 		97
C 76.8
(3)
P 		33.8
(-3)
A 		34.1
(-3)
A 		65.4
(1.4)
A 		43
avr 83
(3) 		21.9
(-3) 		23.6
(-2.8) 		62.2
(1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 116.2
(3)
P 		42.7
(-3)
A 		42.8
(-3)
P 		67.6
(-1)
P 		82
(0.2)
P 		64.3
(-1.2)
P 		74
B 82.3
(-0.6)
P 		86.6
(-0.2)
P 		55.2
(-3)
P 		106
(1.5)
P 		123.2
(3)
P 		66.7
(-2)
P 		68
C 44.3
(-2.7)
P 		71.7
(1.4)
P 		42.1
(-3)
A 		82.3
(3)
A 		48.5
(-2)
P 		67.3
(0.8)
P 		40
avr 80.9
(2.3) 		67
(0.2) 		46.7
(-3) 		85.3
(3) 		84.6
(2.9) 		66.1
(0) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 21.4
(3)
P 		1.1
(-3)
A 		5.4
(-1.7)
A 		8.5
(-0.8)
A 		20
B 36.1
(3)
P 		6.6
(-2.5)
A 		3.7
(-3)
A 		13.5
(-1.2)
P 		32
C 25.4
(3)
P 		9.7
(-3)
A 		11.9
(-2.2)
A 		11
(-2.5)
A 		16
avr 27.6
(3) 		5.8
(-3) 		7
(-2.7) 		11
(-1.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21.4
(1.7)
P 		15.2
(-0.7)
A 		9.3
(-3)
P 		17.1
(0)
P 		24.7
(3)
P 		15.7
(-0.5)
P 		15
B 28.6
(-0.5)
P 		28.8
(-0.5)
P 		13.4
(-3)
P 		28.1
(-0.6)
P 		50.1
(3)
P 		24.9
(-1.1)
P 		37
C 16.4
(-0.1)
P 		21.9
(2.7)
P 		10.7
(-3)
A 		16.5
(-0.1)
A 		15.7
(-0.5)
P 		22.5
(3)
P 		12
avr 22.1
(0.5) 		22
(0.4) 		11.1
(-3) 		20.6
(-0) 		30.2
(3) 		21
(0.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11695
Sequence Type Exemplar sequence
Representative Public ID K07B1.1 NCBI
Target Description K07B1.1 /REP_DB=WormBase Gene ID /WP=CE11876 /TR=O01887 /GB=AAB54236.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073020 NCBI Caenorhabditis elegans TRYpsin-like Protease family member (try-5) (try-5) mRNA, complete cds. 11/11 None
K07B1.1 ENSEMBL cdna:known chromosome:CEL140:V:9349721:9351235:1 gene:K07B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9349720-9351235(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol try-5
Ensembl K07B1.1
Entrez Gene 187088 Entrez gene
SwissProt O01887 EMBL-EBI
WormBase CE35334 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4263 chymotrypsin activity inferred from electronic annotation QuickGO AmiGO
4295 trypsin activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54236 Trypsin-like protease protein 5 [Caenorhabditis elegans] ref|NP_505421.2| TRYpsin-like Protease family member (try-5) [Caenorhabditis elegans] 0.0
blast CAE72159 Hypothetical protein CBG19259 [Caenorhabditis briggsae] 1.0E-138
blast CAB07374 Hypothetical protein F31D4.6 [Caenorhabditis elegans] ref|NP_508030.2| TRYpsin-like Protease family member (try-4) [Caenorhabditis elegans] 7.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:184073_AT
ggcgctatgtgtaccagacttgaacagaaatatggatgtgtaatgtttgaaattttcaaa
tgttttgtacaatttgaagtgtatagatttgcaattggtgacttttacaaaactcattgt
gagcaaggaaatgacatagtgattctggaactagaaagtacaatcgatgacgtggagggt
gccaactatgcatgtcttccatttctcccagaagtgaatattcagtcaggagccaatgta
acttcatttggatggggttcagatcctggaaaaggatttgataatgctgcattcccaatg
atacaagttttgactttggctactgaaactttggcaacctgtgaagaaaactggggaaca
tcaattcctttcgattcgttttgtactgcagaagaagaagacaagaacgtttgctctggt
gacagtggtggtggtcttacattccatcaatcagattccgctcgtgaattcattattgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCTATGTGTACCAGACTTGAAC 261 543 415 Antisense
GACGTGGAGGGTGCCAACTATGCAT 649 377 583 Antisense
CAACTATGCATGTCTTCCATTTCTC 163 189 597 Antisense
GATAATGCTGCATTCCCAATGATAC 226 423 694 Antisense
GGCTACTGAAACTTTGGCAACCTGT 108 539 732 Antisense
GGGGAACATCAATTCCTTTCGATTC 217 497 767 Antisense
CTTTCGATTCGTTTTGTACTGCAGA 41 223 782 Antisense
GAACGTTTGCTCTGGTGACAGTGGT 124 349 819 Antisense
TGGTGGTGGTCTTACATTCCATCAA 62 553 840 Antisense
ATTCCATCAATCAGATTCCGCTCGT 505 7 855 Antisense
TTCCGCTCGTGAATTCATTATTGCA 423 699 870 Antisense
Sequence Source Affymetrix Proprietary Database