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[184072_at]

Description T26A5.1 /REP_DB=WormBase Gene ID /WP=CE00704 /TR=Q22802 /GB=AAC77504.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 18      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 29.8
(-3)
A 		42.7
(-2)
A 		51.3
(-1.4)
A 		110.2
(3)
P 		80
B 45.6
(0.7)
A 		53.1
(3)
A 		45.5
(0.7)
A 		33.3
(-3)
A 		20
C 39
(-0.4)
A 		58.4
(2.3)
A 		20.4
(-3)
A 		63.1
(3)
P 		43
avr 38.1
(-3) 		51.4
(-0.4) 		39.1
(-2.8) 		68.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 24
(-3)
A 		47.6
(-1.5)
A 		51.9
(-1.3)
A 		52.1
(-1.3)
A 		88.8
(1)
P 		120.6
(3)
P 		97
B 55.9
(-1.3)
A 		42.2
(-3)
A 		45.7
(-2.6)
A 		63.2
(-0.4)
M 		87.4
(2.6)
P 		90.8
(3)
P 		49
C 22
(-3)
A 		55.6
(-1.4)
A 		30.6
(-2.6)
A 		96.6
(0.5)
P 		88.2
(0.1)
M 		149.4
(3)
P 		127
avr 34
(-3) 		48.5
(-2) 		42.7
(-2.4) 		70.6
(-0.5) 		88.1
(0.8) 		120.3
(3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.9
(-1.6)
A 		9.3
(-3)
A 		13.4
(0.6)
A 		16.1
(3)
P 		7
B 14.5
(3)
A 		13.1
(1.9)
A 		10.6
(-0.2)
A 		7.1
(-3)
A 		7
C 12.9
(0.6)
A 		16.8
(3)
A 		7.1
(-3)
A 		10.6
(-0.8)
P 		10
avr 12.8
(2.3) 		13.1
(3) 		10.4
(-3) 		11.3
(-1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 4.4
(-3)
A 		16.9
(-0)
A 		11.3
(-1.3)
A 		13.2
(-0.9)
A 		26.8
(2.4)
P 		29.4
(3)
P 		25
B 19.4
(-1)
A 		14.1
(-2.3)
A 		11.1
(-3)
A 		16.7
(-1.6)
M 		35.5
(3)
P 		33.9
(2.6)
P 		24
C 8.2
(-2.9)
A 		17
(-1.7)
A 		7.8
(-3)
A 		19.4
(-1.4)
P 		28.5
(-0.1)
M 		50
(3)
P 		42
avr 10.7
(-2.9) 		16
(-1.7) 		10.1
(-3) 		16.4
(-1.6) 		30.3
(1.4) 		37.8
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6156
Sequence Type Exemplar sequence
Representative Public ID T26A5.1 NCBI
Target Description T26A5.1 /REP_DB=WormBase Gene ID /WP=CE00704 /TR=Q22802 /GB=AAC77504.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066024 NCBI Caenorhabditis elegans T26A5.1 (T26A5.1) mRNA, complete cds. 11/11 None
SNAP00000033276 ENSEMBL cdna:SNAP chromosome:CEL140:III:6471706:6475141:1 11/11 None
GENEFINDER00000033293 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6471706:6475121:1 11/11 None
T26A5.1 ENSEMBL cdna:known chromosome:CEL140:III:6472276:6475141:1 gene:T26A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6472274-6475140(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A5.1
Entrez Gene 188911 Entrez gene
SwissProt Q22802 EMBL-EBI
WormBase CE38981 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498425 T26A5.1 [Caenorhabditis elegans] 0.0
blast AAC77504 Hypothetical protein T26A5.1 [Caenorhabditis elegans] 0.0
blast CAE72506 Hypothetical protein CBG19685 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 3.4E-36
Pfam IPR003439 EMBL-EBI ABC transporter 3.4E-36
Pfam IPR003439 EMBL-EBI ABC transporter 5.0E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498425.1 5 351-373,385-407,436-458,465-487,578-600
T26A5.1 5 351-373,385-407,436-458,465-487,578-600
SNAP00000033276 5 387-409,452-474,479-501,522-544,595-617
GENEFINDER00000033293 5 365-387,399-421,450-472,479-501,592-614
Sequence
Target Sequence 
>C. ELEGANS:184072_AT
gaatttccactggttgctcgagagtatcacgatggactctacaatctttggacatactac
tttgctcgttgtatctctcttattcctctcttctctactgatggtcttattcttctgttt
atagtttactggttgattggacttaacacttctgttatgcaggtcattgtcgcatcaatc
atcactgtactcgcaagtcaagcagcctctgcttttggaatcgccatgtcatgcatcttc
ccaactgctcagatgactgctgtaatggcaagcccacctctagttttgttccggcttttc
ggtggattatacggtaatactaacactttccctgccgcaattcgatggcttcagtggatt
agtatgtacagatttgcattcgaaggtctagttgtcaatcagtggtctgaaattgacgat
ttccactcaaatgccaaaaataattggacaaattctacgacgaacgatgtgcttgattac
tttgcattctctgaatcggcaattccacttgatatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTCCACTGGTTGCTCGAGAGT 44 327 1243 Antisense
TACTACTTTGCTCGTTGTATCTCTC 706 645 1297 Antisense
TCTCTTCTCTACTGATGGTCTTATT 196 613 1329 Antisense
TTGTCGCATCAATCATCACTGTACT 332 707 1409 Antisense
CTGTACTCGCAAGTCAAGCAGCCTC 553 239 1427 Antisense
TCTTCCCAACTGCTCAGATGACTGC 567 617 1478 Antisense
TGTAATGGCAAGCCCACCTCTAGTT 408 555 1503 Antisense
TACGGTAATACTAACACTTTCCCTG 455 647 1552 Antisense
CCTGCCGCAATTCGATGGCTTCAGT 465 265 1573 Antisense
GCTTGATTACTTTGCATTCTCTGAA 451 307 1713 Antisense
GAATCGGCAATTCCACTTGATATCA 453 329 1735 Antisense
Sequence Source Affymetrix Proprietary Database