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[184070_at]

Description C43H6.1 /REP_DB=WormBase Gene ID /WP=CE06952 /TR=Q18589 /GB=AAA96088.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 71      6grp_total > 40      4grp_total > 14      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 370.2
(1.8)
P 		243
(-3)
P 		277.9
(-1.7)
P 		401.3
(3)
P 		158
B 279.5
(0.3)
P 		315.1
(3)
P 		236.2
(-3)
P 		250.8
(-1.9)
P 		79
C 311
(-0.2)
P 		257.1
(-3)
P 		294.3
(-1.1)
P 		372.4
(3)
P 		115
avr 320.2
(1.2) 		271.7
(-2.8) 		269.5
(-3) 		341.5
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 348.2
(-0.3)
P 		385.4
(0.4)
P 		484.7
(2.2)
P 		526.1
(3)
P 		267.7
(-1.8)
P 		204.9
(-3)
P 		321
B 306
(0.3)
P 		359.2
(1.5)
P 		393.6
(2.2)
P 		429.4
(3)
P 		319.7
(0.6)
P 		154.8
(-3)
P 		275
C 390.7
(1.4)
P 		458.8
(3)
P 		377.1
(1.1)
P 		443.9
(2.6)
P 		268.1
(-1.5)
P 		207.3
(-3)
P 		252
avr 348.3
(0.4) 		401.1
(1.6) 		418.5
(2) 		466.5
(3) 		285.2
(-0.9) 		189
(-3) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 134.8
(3)
P 		52.7
(-3)
P 		72.7
(-1.5)
P 		58.7
(-2.6)
P 		82
B 89.1
(3)
P 		77.8
(1.1)
P 		54.7
(-2.8)
P 		53.4
(-3)
P 		36
C 102.9
(3)
P 		73.9
(-1.3)
P 		102.6
(3)
P 		62.8
(-3)
P 		40
avr 108.9
(3) 		68.1
(-1.8) 		76.7
(-0.8) 		58.3
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 64.2
(-2)
P 		137.1
(3)
P 		105.6
(0.8)
P 		133.4
(2.7)
P 		80.8
(-0.9)
P 		49.9
(-3)
P 		87
B 106.5
(1.1)
P 		119.5
(2.1)
P 		95.6
(0.1)
P 		113.7
(1.7)
P 		129.9
(3)
P 		57.7
(-3)
P 		72
C 144.8
(3)
P 		140
(2.6)
P 		96
(-0.9)
P 		89.3
(-1.4)
P 		86.8
(-1.6)
P 		69.4
(-3)
P 		75
avr 105.2
(0.8) 		132.2
(3) 		99.1
(0.3) 		112.1
(1.4) 		99.2
(0.3) 		59
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18498
Sequence Type Exemplar sequence
Representative Public ID C43H6.1 NCBI
Target Description C43H6.1 /REP_DB=WormBase Gene ID /WP=CE06952 /TR=Q18589 /GB=AAA96088.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076038 NCBI Caenorhabditis elegans C43H6.1 (C43H6.1) mRNA, complete cds. 11/11 None
SNAP00000018905 ENSEMBL cdna:SNAP chromosome:CEL140:X:2409672:2412728:1 10/11 None
GENEFINDER00000018909 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2409672:2412258:1 9/11 None
C43H6.1 ENSEMBL cdna:known chromosome:CEL140:X:2409705:2412960:1 gene:C43H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2410942-2412728(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H6.1
Entrez Gene 180546 Entrez gene
SwissProt Q5WRR4 EMBL-EBI
WormBase CE37619 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28361 Hypothetical protein C43H6.1 [Caenorhabditis elegans] ref|NP_508439.2| C43H6.1 [Caenorhabditis elegans] 0.0
blast T29994 hypothetical protein C43H6.1 - Caenorhabditis elegans 1.0E-137
blast T29994 hypothetical protein C43H6.1 - Caenorhabditis elegans 1.0E-120
blast AAV28361 Hypothetical protein C43H6.1 [Caenorhabditis elegans] ref|NP_508439.2| C43H6.1 [Caenorhabditis elegans] 1.0E-100
blast T29994 hypothetical protein C43H6.1 - Caenorhabditis elegans 1.0E-100
blast T29993 hypothetical protein C43H6.2 - Caenorhabditis elegans 4.0E-63
Sequence
Target Sequence 
>C. ELEGANS:184070_AT
cgattctcaccatttccgtggaatagtttgataagaattgaagcattgcaatcgcatgtt
gaacagattgtcaacattttccggttacgaaatgagccagaaagttatctcaatgactgg
gaaaaacgtttggaaagtgtcaagtatctttatgtgagagtgctgcatgggcttggagaa
tatcaaatctcaatgactatgttgaacaaagttcgagaggagactaaaaacaatgaagaa
aaaactgctctgtccagagctttgatgagaatggcaatgcaagctggcgacgagaaagca
atgaatatttatgcagaagaagcaaataaactttccaatggtaccaatgcaatgacagtt
cacaaagctatgaggagtatattcctgggctcgaacaatcacgccaacgaatacattgct
cgcattccaatcacagacgatcaaactccgcaatacatcaacacaaaagcgttgattcag
ttgtacactggacgggcggtagacgctgttaaaactatcactcaaatcaagccgattcta
cctggcccaacaactacaaacctgagaacgattgctgaactttgctactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTCTCACCATTTCCGTGGAATA 260 249 226 Antisense
GATTGTCAACATTTTCCGGTTACGA 272 423 291 Antisense
GAGAGTGCTGCATGGGCTTGGAGAA 32 395 381 Antisense
GAATGGCAATGCAAGCTGGCGACGA 454 333 494 Antisense
TCCTGGGCTCGAACAATCACGCCAA 61 595 608 Antisense
CACGCCAACGAATACATTGCTCGCA 642 199 625 Antisense
ATTGCTCGCATTCCAATCACAGACG 584 5 640 Antisense
CACAGACGATCAAACTCCGCAATAC 21 197 657 Antisense
TGTACACTGGACGGGCGGTAGACGC 524 553 707 Antisense
TTCTACCTGGCCCAACAACTACAAA 225 673 761 Antisense
GAACGATTGCTGAACTTTGCTACTC 708 347 791 Antisense
Sequence Source Affymetrix Proprietary Database