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[184069_at]

Description F49E12.7 /REP_DB=WormBase Gene ID /WP=CE03383 /TR=Q20614 /GB=CAA91386.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 11      6grp_total > 22      4grp_total > 13      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 123.4
(-0.3)
P 		38.3
(-3)
A 		39.8
(-3)
P 		230.7
(3)
P 		192
B 125.9
(3)
P 		84.5
(-0.7)
P 		58.5
(-3)
P 		99.2
(0.6)
P 		67
C 118.8
(0.2)
P 		68.9
(-2.1)
P 		49.7
(-3)
A 		180.5
(3)
P 		131
avr 122.7
(0.6) 		63.9
(-2.3) 		49.3
(-3) 		170.1
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 147.5
(0.8)
P 		86.8
(-1)
P 		220.2
(3)
P 		61.7
(-1.7)
P 		81
(-1.2)
P 		19.6
(-3)
A 		201
B 131
(0.2)
P 		196.9
(3)
P 		145.8
(0.8)
P 		144.3
(0.8)
P 		71
(-2.3)
P 		55.6
(-3)
P 		141
C 86.8
(-1.3)
P 		223.6
(3)
P 		65
(-2)
M 		87.3
(-1.3)
P 		32.9
(-3)
A 		53.8
(-2.3)
P 		191
avr 121.8
(0.7) 		169.1
(3) 		143.7
(1.8) 		97.8
(-0.4) 		61.6
(-2.1) 		43
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 44.9
(3)
P 		8.3
(-3)
A 		10.4
(-2.7)
P 		33.8
(1.2)
P 		37
B 40.2
(3)
P 		20.9
(-1.4)
P 		13.6
(-3)
P 		21.1
(-1.3)
P 		27
C 39.3
(3)
P 		19.8
(-2.3)
P 		17.3
(-3)
A 		30.4
(0.6)
P 		22
avr 41.5
(3) 		16.3
(-2.5) 		13.8
(-3) 		28.4
(0.2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 27.2
(0.1)
P 		30.9
(0.6)
P 		47.9
(3)
P 		15.7
(-1.5)
P 		24.4
(-0.3)
P 		4.8
(-3)
A 		43
B 45.6
(0.3)
P 		65.5
(3)
P 		35.4
(-1)
P 		38.2
(-0.7)
P 		28.9
(-1.9)
P 		20.7
(-3)
P 		45
C 32.2
(-0.8)
P 		68.2
(3)
P 		16.5
(-2.4)
M 		17.6
(-2.3)
P 		10.6
(-3)
A 		18
(-2.2)
P 		58
avr 35
(0) 		54.9
(3) 		33.3
(-0.2) 		23.8
(-1.6) 		21.3
(-2) 		14.5
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3849
Sequence Type Exemplar sequence
Representative Public ID F49E12.7 NCBI
Target Description F49E12.7 /REP_DB=WormBase Gene ID /WP=CE03383 /TR=Q20614 /GB=CAA91386.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063365 NCBI Caenorhabditis elegans F49E12.7 (F49E12.7) mRNA, complete cds. 11/11 None
GENEFINDER00000030010 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8395198:8396050:-1 11/11 None
F49E12.7 ENSEMBL cdna:known chromosome:CEL140:II:8395198:8396050:-1 gene:F49E12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029999 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8395194-8396047(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49E12.7
Entrez Gene 186059 Entrez gene
SwissProt Q20614 EMBL-EBI
WormBase CE03383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91386 Hypothetical protein F49E12.7 [Caenorhabditis elegans] ref|NP_495766.1| F49E12.7 [Caenorhabditis elegans] 1.0E-108
blast CAE57657 Hypothetical protein CBG00647 [Caenorhabditis briggsae] 1.0E-100
blast AAY44000 Hypothetical protein K04C2.7 [Caenorhabditis elegans] ref|NP_001022659.1| K04C2.7 [Caenorhabditis elegans] 4.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495766.1 3 25-47,133-155,170-192
F49E12.7 3 25-47,133-155,170-192
GENEFINDER00000030010 3 25-47,133-155,170-192
Sequence
Target Sequence 
>C. ELEGANS:184069_AT
ataaaccgctggcaattcttttagcgttaatgcaattatcaatttcaatagcatcatttc
tacagcacgtttattcattttacaaacaccggaagatatttgaatgccactcagatatac
cgaataactctagtctagagacacattttctcgcgcacgatatcattatttttgactttg
gtttaatgcacagagttcttggaacaaatgaatgtgttgcgaattacttggatggtggat
acatgagatttgcatggacaattgaacagtcaagtgcactttctatatcacttatatcat
tgatgtgtgtcccaaaaccgttgtggttgttatggccaggtcttctaatgcaatcctctt
atactcttggcctatctgtccttacaatggcaactgctccaaaaattcttgaagcactgg
gaggagtaattgattttgagcttgcactaatattcacagtctactctatgggatttgcaa
tgaattggctgttcacatttgttctttggcactattattggcatcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAACCGCTGGCAATTCTTTTAGC 8 21 80 Antisense
GCATCATTTCTACAGCACGTTTATT 432 307 130 Antisense
GAATGCCACTCAGATATACCGAATA 294 329 181 Antisense
TAGAGACACATTTTCTCGCGCACGA 397 653 215 Antisense
GATGTGTGTCCCAAAACCGTTGTGG 644 407 381 Antisense
ATGGCCAGGTCTTCTAATGCAATCC 557 53 411 Antisense
AATGCAATCCTCTTATACTCTTGGC 364 165 426 Antisense
CTGTCCTTACAATGGCAACTGCTCC 586 239 455 Antisense
CACAGTCTACTCTATGGGATTTGCA 245 195 534 Antisense
GGCTGTTCACATTTGTTCTTTGGCA 267 541 566 Antisense
CTTTGGCACTATTATTGGCATCGGG 494 223 583 Antisense
Sequence Source Affymetrix Proprietary Database