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[184068_at]

Description R05D8.7 /REP_DB=WormBase Gene ID /WP=CE21095 /TR=Q9N5G4 /GB=AAF39950.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 250
(-0.5)
P 		62.3
(-2.7)
A 		34
(-3)
A 		556.9
(3)
P 		523
B 267.3
(-0.1)
P 		73
(-2.4)
A 		18.5
(-3)
A 		541.6
(3)
P 		523
C 279.4
(-0.7)
P 		52.8
(-2.8)
A 		28.4
(-3)
A 		684.5
(3)
P 		656
avr 265.6
(-0.5) 		62.7
(-2.6) 		27
(-3) 		594.3
(3) 		567

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 549
1 2 3 4 5 6 range
A 523.9
(2.3)
P 		112.9
(-2.8)
A 		134.2
(-2.5)
A 		97.8
(-3)
A 		262.1
(-1)
P 		580
(3)
P 		482
B 426.5
(0.9)
P 		102.2
(-2.9)
A 		120.7
(-2.7)
M 		95.4
(-3)
A 		151.9
(-2.3)
P 		599.7
(3)
P 		504
C 353.2
(-0.1)
P 		163.8
(-2.2)
M 		157.8
(-2.3)
A 		92
(-3)
A 		200.4
(-1.8)
P 		640.8
(3)
P 		549
avr 434.5
(1) 		126.3
(-2.6) 		137.6
(-2.5) 		95.1
(-3) 		204.8
(-1.7) 		606.8
(3) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 91
(3)
P 		13.5
(-2.7)
A 		8.9
(-3)
A 		81.5
(2.3)
P 		82
B 85.2
(1.4)
P 		18
(-2.3)
A 		4.3
(-3)
A 		115.4
(3)
P 		111
C 92.5
(1.7)
P 		15.2
(-2.7)
A 		9.9
(-3)
A 		115.4
(3)
P 		106
avr 89.6
(2.1) 		15.6
(-2.5) 		7.7
(-3) 		104.1
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 96.6
(0.7)
P 		40.1
(-2.2)
A 		29.2
(-2.8)
A 		24.8
(-3)
A 		79.1
(-0.2)
P 		141.2
(3)
P 		116
B 148.4
(0.7)
P 		34
(-2.7)
A 		29.3
(-2.9)
M 		25.3
(-3)
A 		61.7
(-1.9)
P 		223.6
(3)
P 		198
C 130.9
(0.4)
P 		50
(-2)
M 		40.2
(-2.3)
A 		18.5
(-3)
A 		64.9
(-1.6)
P 		214.5
(3)
P 		196
avr 125.3
(0.6) 		41.4
(-2.3) 		32.9
(-2.6) 		22.9
(-3) 		68.6
(-1.4) 		193.1
(3) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15433
Sequence Type Exemplar sequence
Representative Public ID R05D8.7 NCBI
Target Description R05D8.7 /REP_DB=WormBase Gene ID /WP=CE21095 /TR=Q9N5G4 /GB=AAF39950.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071350 NCBI Caenorhabditis elegans R05D8.7 (R05D8.7) mRNA, complete cds. 11/11 None
SNAP00000009121 ENSEMBL cdna:SNAP chromosome:CEL140:V:2761716:2763006:-1 11/11 None
GENEFINDER00000009148 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2761716:2763006:-1 11/11 None
R05D8.7 ENSEMBL cdna:known chromosome:CEL140:V:2761716:2763006:-1 gene:R05D8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2761715-2763006(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05D8.7
Entrez Gene 187608 Entrez gene
SwissProt Q9N5G4 EMBL-EBI
WormBase CE21095 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503751 R05D8.7 [Caenorhabditis elegans] gb|AAF39950.1| Hypothetical protein R05D8.7 [Caenorhabditis elegans] pdb|1XKQ|D Chain D, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor pdb|1XKQ|C Chain C, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor pdb|1XKQ|B Chain B, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor 1.0E-153
blast CAE66768 Hypothetical protein CBG12123 [Caenorhabditis briggsae] 1.0E-123
blast CAE66769 Hypothetical protein CBG12124 [Caenorhabditis briggsae] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.9E-54
Sequence
Target Sequence 
>C. ELEGANS:184068_AT
acaatgctggtgctgcaattcccgacgcattcggaacaactggcacagatcagggcattg
atatctaccacaaaacactaaaattaaaccttcaagccgtcatcgaaatgactaagaaag
tgaagccacatttggtagcctcaaaaggagaaatcgttaatgtttcaagtattgttgcag
gcccacaagcgcagcccgacttcttgtattacgcaattgcgaaggcagcccttgaccagt
ataccagaagtactgcgatcgacctcgctaaatttgggattcgtgtgaactcagttagcc
ctggaatggtagaaaccggatttaccaatgctatgggaatgcctgatcaagcttctcaaa
agttctacaatttcatggcatctcacaaggaatgcatcccaattggagccgctggaaagc
ctgagcacattgcgaatattatcctattcctggcggatcgtaacttgtcattttatattc
ttggtcaatcaattgttgccgacggaggaacttctcttgtgatggggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATGCTGGTGCTGCAATTCCCGA 316 115 287 Antisense
ATTAAACCTTCAAGCCGTCATCGAA 450 11 369 Antisense
GTGAAGCCACATTTGGTAGCCTCAA 461 481 406 Antisense
AGCCCGACTTCTTGTATTACGCAAT 111 83 479 Antisense
CGAAGGCAGCCCTTGACCAGTATAC 359 251 506 Antisense
AGTACTGCGATCGACCTCGCTAAAT 594 61 535 Antisense
GAATGCCTGATCAAGCTTCTCAAAA 272 331 623 Antisense
GTTCTACAATTTCATGGCATCTCAC 638 443 648 Antisense
GGAATGCATCCCAATTGGAGCCGCT 299 533 675 Antisense
ATTCCTGGCGGATCGTAACTTGTCA 465 7 732 Antisense
GAGGAACTTCTCTTGTGATGGGGAC 1 405 791 Antisense
Sequence Source Affymetrix Proprietary Database