[Home] | [Total List]

[184067_at]

Description C34G6.1 /REP_DB=WormBase Gene ID /WP=CE23569 /TR=Q9N4C0 /GB=AAF36069.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 122.6
(-0.4)
M 		116.9
(-0.6)
A 		61.4
(-3)
A 		202.4
(3)
P 		141
B 138.7
(0.9)
M 		106.9
(-3)
A 		115.8
(-1.9)
P 		155.4
(3)
P 		49
C 131.9
(-2.8)
P 		131
(-3)
M 		140.2
(-1.1)
P 		160
(3)
P 		29
avr 131.1
(-0.7) 		118.3
(-1.9) 		105.8
(-3) 		172.6
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 204.8
(3)
P 		122.3
(-1.1)
P 		134.5
(-0.5)
M 		83.6
(-3)
A 		185.9
(2.1)
M 		204.8
(3)
P 		121
B 242.2
(3)
P 		186
(-0.4)
P 		190.8
(-0.1)
A 		143.1
(-3)
P 		151
(-2.5)
P 		163.1
(-1.8)
P 		99
C 250.9
(3)
P 		188.2
(0.5)
P 		101.8
(-2.8)
A 		97.6
(-3)
P 		121.6
(-2.1)
P 		131.4
(-1.7)
P 		153
avr 232.6
(3) 		165.5
(-0.2) 		142.4
(-1.3) 		108.1
(-3) 		152.8
(-0.8) 		166.4
(-0.2) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 44.6
(3)
M 		25.4
(-1)
A 		16.1
(-3)
A 		29.6
(-0.2)
P 		29
B 44.2
(3)
M 		26.4
(-3)
A 		26.8
(-2.9)
P 		33.1
(-0.7)
P 		18
C 43.7
(1.6)
P 		37.7
(-0.1)
M 		48.9
(3)
P 		27
(-3)
P 		22
avr 44.2
(3) 		29.8
(-3) 		30.6
(-2.7) 		29.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 37.8
(-0.1)
P 		43.5
(0.8)
P 		29.3
(-1.6)
M 		21.2
(-3)
A 		56.1
(3)
M 		49.9
(1.9)
P 		35
B 84.3
(3)
P 		61.9
(0.1)
P 		46.3
(-1.9)
A 		37.9
(-3)
P 		61.4
(0)
P 		60.8
(-0)
P 		46
C 93
(3)
P 		57.4
(0.1)
P 		25.9
(-2.5)
A 		19.6
(-3)
P 		39.4
(-1.4)
P 		44
(-1)
P 		73
avr 71.7
(3) 		54.3
(0.7) 		33.8
(-2) 		26.2
(-3) 		52.3
(0.4) 		51.6
(0.3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.441
Sequence Type Exemplar sequence
Representative Public ID C34G6.1 NCBI
Target Description C34G6.1 /REP_DB=WormBase Gene ID /WP=CE23569 /TR=Q9N4C0 /GB=AAF36069.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059310 NCBI Caenorhabditis elegans C34G6.1 (C34G6.1) mRNA, complete cds. 11/11 None
SNAP00000037512 ENSEMBL cdna:SNAP chromosome:CEL140:I:5915029:5925917:1 11/11 None
GENEFINDER00000037514 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5921189:5925917:1 11/11 None
C34G6.1 ENSEMBL cdna:known chromosome:CEL140:I:5914847:5926365:1 gene:C34G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5914846-5925917(+) 99.93 100.0
Public Domain and Genome References
Gene Title
Ensembl C34G6.1
Entrez Gene 172265 Entrez gene
SwissProt Q8T3B6 EMBL-EBI
WormBase CE30431 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.3215.1.S1_AT similar to C34G6.1 cfa
CANINE_2:CFAAFFX.3218.1.S1_S_AT similar to C34G6.1 cfa
MU11KSUBA:AA273803_S_AT RIKEN cDNA D330001F17 gene mm
MG-U74AV2:104122_AT RIKEN cDNA D330001F17 gene mm
MG-U74AV2:162350_AT RIKEN cDNA D330001F17 gene mm
MOE430A:1433808_AT RIKEN cDNA D330001F17 gene mm
MOUSE430A_2:1433808_AT RIKEN cDNA D330001F17 gene mm
MOUSE430_2:1433808_AT RIKEN cDNA D330001F17 gene mm
MOE430B:1459218_AT RIKEN cDNA D330001F17 gene mm
MOUSE430_2:1459218_AT RIKEN cDNA D330001F17 gene mm
MU19KSUBB:TC33643_R_AT MKIAA1833 protein mm
Protein Similarities
Method ID Description E-Value
blast AAL02457 Hypothetical protein C34G6.1 [Caenorhabditis elegans] ref|NP_491711.2| C34G6.1 [Caenorhabditis elegans] 0.0
blast CAE60421 Hypothetical protein CBG04027 [Caenorhabditis briggsae] 0.0
blast H87789 protein C34G6.1 [imported] - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:184067_AT
atcaatacttccacttgttctactcaagattcgaccatgttttgagaaagattcccacac
tctgcgagcagcatcattcagtttatttggagagcttggatccagagttggtgagaacag
tgaagaattcagaggtcacctacatacaaatattgtctcacttctacttcacttgaatga
tgatttcgaagaagttcgacagaactgtgctaactcgatatatcggcttcatggcctgct
cacatccccgaatgcatcaatatgtattgaacgtgaattgaaggatggaaaacaaccggc
cagctataatctattcatcaaggatttcgcttcaattttggccaactcatttcctgatcg
gatcaatcaatatgctctcgccacttccaattatttcaaaagttcaagtgccagaatacg
gtgtaatgcggcacatcttactggatgtcttttggatggactcactgctccactcagagc
tacaatcagtcgagagcttgtattcactggactcgtggctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATACTTCCACTTGTTCTACTC 584 25 4845 Antisense
TGAGAAAGATTCCCACACTCTGCGA 386 569 4887 Antisense
AAATATTGTCTCACTTCTACTTCAC 699 115 4992 Antisense
GATATATCGGCTTCATGGCCTGCTC 109 427 5061 Antisense
CTCACATCCCCGAATGCATCAATAT 695 227 5083 Antisense
ACCGGCCAGCTATAATCTATTCATC 319 89 5139 Antisense
GGATTTCGCTTCAATTTTGGCCAAC 39 511 5166 Antisense
GCCAACTCATTTCCTGATCGGATCA 272 279 5185 Antisense
GTCTTTTGGATGGACTCACTGCTCC 277 467 5291 Antisense
CTCACTGCTCCACTCAGAGCTACAA 240 229 5305 Antisense
TGTATTCACTGGACTCGTGGCTCTT 405 561 5343 Antisense
Sequence Source Affymetrix Proprietary Database