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[184066_at]

Description F09E5.4 /REP_DB=WormBase Gene ID /WP=CE02611 /TR=Q19258 /GB=AAA79346.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 74      6grp_total > 65      4grp_total > 36      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 620.6
(1.1)
P 		623.4
(1.2)
P 		467.8
(-3)
P 		690.1
(3)
P 		222
B 480.1
(-3)
P 		579
(3)
P 		491.9
(-2.3)
P 		516.1
(-0.8)
P 		99
C 559
(-0.3)
P 		609.2
(3)
P 		527.2
(-2.4)
P 		518.7
(-3)
P 		91
avr 553.2
(0.2) 		603.9
(3) 		495.6
(-3) 		575
(1.4) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 837
1 2 3 4 5 6 range
A 556
(-2)
P 		503.3
(-3)
P 		810.8
(3)
P 		536
(-2.4)
P 		674.1
(0.3)
P 		560.7
(-1.9)
P 		308
B 602.8
(-3)
P 		670.8
(-1.8)
P 		952.5
(3)
P 		756.9
(-0.4)
P 		666.9
(-1.9)
P 		849.5
(1.2)
P 		350
C 451
(-3)
P 		581
(-2.1)
P 		622.6
(-1.8)
P 		776.4
(-0.7)
P 		548.5
(-2.3)
P 		1288.2
(3)
P 		837
avr 536.6
(-3) 		585
(-2.2) 		795.3
(1.3) 		689.8
(-0.5) 		629.8
(-1.5) 		899.5
(3) 		363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 226
(3)
P 		135.3
(-1.4)
P 		122.3
(-2)
P 		101
(-3)
P 		125
B 153.1
(3)
P 		143
(1.6)
P 		114
(-2.4)
P 		110
(-3)
P 		43
C 185
(3)
P 		175.2
(2.4)
P 		183.8
(2.9)
P 		87.5
(-3)
P 		98
avr 188
(3) 		151.2
(0.5) 		140
(-0.3) 		99.5
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 102.5
(-3)
P 		179
(1.5)
P 		176.6
(1.4)
P 		135.9
(-1)
P 		203.4
(3)
P 		136.5
(-1)
P 		101
B 209.7
(-2.5)
P 		223.3
(-1.8)
P 		231.3
(-1.4)
P 		200.5
(-3)
P 		271
(0.6)
P 		316.8
(3)
P 		116
C 167.2
(-2.8)
P 		177.3
(-2.5)
P 		158.5
(-2.9)
P 		156.1
(-3)
P 		177.5
(-2.5)
P 		431.2
(3)
P 		275
avr 159.8
(-3) 		193.2
(-1.5) 		188.8
(-1.7) 		164.2
(-2.8) 		217.3
(-0.4) 		294.8
(3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4039
Sequence Type Exemplar sequence
Representative Public ID F09E5.4 NCBI
Target Description F09E5.4 /REP_DB=WormBase Gene ID /WP=CE02611 /TR=Q19258 /GB=AAA79346.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062602(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062602 NCBI Caenorhabditis elegans Boca/MESD chaperone for YWTD beta-propeller-EGF family member (bmy-1) (bmy-1) mRNA, complete cds. 9/11 None
SNAP00000044012 ENSEMBL cdna:SNAP chromosome:CEL140:II:5356173:5359318:1 11/11 None
GENEFINDER00000044024 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5358665:5359318:1 9/11 None
F09E5.17 ENSEMBL cdna:known chromosome:CEL140:II:5358665:5359318:1 gene:F09E5.17 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182270 2/11 Cross Hyb Matching Probes None
GENEFINDER00000044035 2/11 Cross Hyb Matching Probes None
F09E5.4 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5356017-5359316(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bmy-1
Ensembl F09E5.17
Entrez Gene 173908 Entrez gene
SwissProt Q8IG33 EMBL-EBI
WormBase CE32363 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583752_AT similar to Mesoderm development candidate 2 cfa
CANINE_2:CFA.10379.1.A1_AT similar to Mesoderm development candidate 2 cfa
CANINE_2:CFAAFFX.21385.1.S1_S_AT similar to Mesoderm development candidate 2 cfa
DROSOPHILA_2:1623599_AT boca dm
CHICKEN:GGA.13343.1.S1_AT mesoderm development candidate 2 gga
CHICKEN:GGA.17143.1.S1_S_AT mesoderm development candidate 2 gga
CHICKEN:GGAAFFX.12183.1.S1_S_AT mesoderm development candidate 2 gga
HG-U133B:224679_AT mesoderm development candidate 2 hs
HG-U133_PLUS_2:224679_AT mesoderm development candidate 2 hs
HG-U133_PLUS_2:238679_AT mesoderm development candidate 2 hs
HG-U133B:238679_AT mesoderm development candidate 2 hs
HUGENEFL:D42039_AT mesoderm development candidate 2 hs
U133_X3P:HS.78871.0.S3_3P_X_AT mesoderm development candidate 2 hs
U133_X3P:HS.78871.0.S2_3P_AT mesoderm development candidate 2 hs
U133_X3P:HS.78871.0.S1_3P_AT mesoderm development candidate 2 hs
U133_X3P:HS.72065.0.A1_3P_AT mesoderm development candidate 2 hs
U133_X3P:HS.146049.0.A1_3P_X_AT mesoderm development candidate 2 hs
U133_X3P:HS.146049.0.A1_3P_AT mesoderm development candidate 2 hs
HG-U133_PLUS_2:224672_X_AT mesoderm development candidate 2 hs
HG-U133B:224672_X_AT mesoderm development candidate 2 hs
HG-U133_PLUS_2:224675_AT mesoderm development candidate 2 hs
HG-U133B:224675_AT mesoderm development candidate 2 hs
HG-U133_PLUS_2:239746_AT mesoderm development candidate 2 hs
HG-U133B:239746_AT mesoderm development candidate 2 hs
HG-U95E:71910_AT mesoderm development candidate 2 hs
HG-U95E:82883_AT mesoderm development candidate 2 hs
HU35KSUBA:AA287199_AT Mesoderm development candidate 2 hs
MU11KSUBA:AA221719_S_AT mesoderm development candiate 2 mm
MG-U74AV2:95405_AT mesoderm development candiate 2 mm
MG-U74AV2:162231_R_AT mesoderm development candiate 2 mm
MOE430A:1416181_AT mesoderm development candiate 2 mm
MOUSE430A_2:1416181_AT mesoderm development candiate 2 mm
MOUSE430_2:1416181_AT mesoderm development candiate 2 mm
MOE430B:1436749_AT mesoderm development candiate 2 mm
MOUSE430_2:1436749_AT mesoderm development candiate 2 mm
MOE430B:1444035_AT mesoderm development candiate 2 mm
MOUSE430_2:1444035_AT mesoderm development candiate 2 mm
MU19KSUBB:TC28575_AT Mesoderm development candiate 2, mRNA (cDNA clone MGC:25959 IMAGE:4239248) mm
RG-U34C:RC_AI175064_AT mesoderm development candiate 2 (predicted) rn
RAE230A:1371820_AT mesoderm development candiate 2 (predicted) rn
RAT230_2:1371820_AT mesoderm development candiate 2 (predicted) rn
RAE230B:1394616_AT mesoderm development candiate 2 (predicted) rn
RAT230_2:1394616_AT mesoderm development candiate 2 (predicted) rn
RAE230B:1378331_AT Mesoderm development candiate 2 (predicted) rn
RAT230_2:1378331_AT Mesoderm development candiate 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast T15998 hypothetical protein F09E5.4 - Caenorhabditis elegans 1.0E-173
blast CAE59083 Hypothetical protein CBG02375 [Caenorhabditis briggsae] 1.0E-138
blast AAN63416 Serpentine receptor, class g (gamma) protein 69 [Caenorhabditis elegans] ref|NP_872070.1| Serpentine Receptor, class G (gamma) family member (srg-69) [Caenorhabditis elegans] sp|Q19258|SRG69_CAEEL Serpentine receptor class gamma-69 (Protein srg-69) 4.0E-85
blast AAN63414 Hypothetical protein F09E5.17 [Caenorhabditis elegans] ref|NP_495003.2| Boca/MESD chaperone for YWTD beta-propeller-EGF family member (bmy-1) [Caenorhabditis elegans] 4.0E-84
blast T15998 hypothetical protein F09E5.4 - Caenorhabditis elegans 4.0E-84
blast CAE59083 Hypothetical protein CBG02375 [Caenorhabditis briggsae] 5.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000044012 4 6-25,46-63,95-117,130-149
Sequence
Target Sequence 
>C. ELEGANS:184066_AT
agaatggtttctgttgcaccagccacgatatctttgcaaaaaagcacgatgaagtggagg
acggtattcattttcctgttagctgctcatatcggacttgccaatgttaaacaaaaaaag
aaggatctatccagttacacagatgcggagctggaaaagctgtatgaagagtgggaggaa
aacgacgaggacgaactagaagaagatgagaagccagaacacaaaagaaaaccgccacaa
ttggatctggaaagtatgaaggcaaaagccaaagacccggaggatcttcttatgatgtca
aagaaaggccaaacattgatgctcttcgtcggagttgttgatccatcgcaaccagatcgc
tcggatattcgcccgttcacggaaaaatggacgcaaatatggcaatctcaactctacaat
aatcacgtggatctgcaagtttttgtgattgacgataatagggccatcttcatgttcaaa
aacggagaacaagcattcgaagcaaagaaattccttttgaaacaagaattcgtttccgaa
gtgacgatcgaaggacagagctttgacggacctgcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGGTTTCTGTTGCACCAGCCA 531 73 826 Antisense
GCACCAGCCACGATATCTTTGCAAA 359 315 841 Antisense
GGAGGACGGTATTCATTTTCCTGTT 648 515 881 Antisense
TTAGCTGCTCATATCGGACTTGCCA 167 679 904 Antisense
GACCCGGAGGATCTTCTTATGATGT 478 381 1099 Antisense
GGCCAAACATTGATGCTCTTCGTCG 50 543 1132 Antisense
GGAGTTGTTGATCCATCGCAACCAG 521 517 1156 Antisense
GCAACCAGATCGCTCGGATATTCGC 237 321 1173 Antisense
AATATGGCAATCTCAACTCTACAAT 390 173 1221 Antisense
GATAATAGGGCCATCTTCATGTTCA 630 421 1279 Antisense
GACAGAGCTTTGACGGACCTGCGAA 244 369 1379 Antisense
Sequence Source Affymetrix Proprietary Database