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[184065_at]

Description Y38F1A.7 /REP_DB=WormBase Gene ID /WP=CE21612 /TR=Q9XWM3 /GB=CAA21632.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 31.5
(0.9)
A 		30.7
(0.7)
A 		15.8
(-3)
A 		40.1
(3)
A 		24
B 19.1
(-2.3)
A 		16.7
(-2.5)
A 		10.8
(-3)
A 		85.9
(3)
A 		75
C 33.6
(-1.7)
A 		14.6
(-2.6)
A 		6.5
(-3)
A 		134.1
(3)
A 		128
avr 28.1
(-1.6) 		20.7
(-2.2) 		11
(-3) 		86.7
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 4.2
(-3)
A 		10.6
(-2.5)
A 		40.2
(-0.2)
A 		14
(-2.2)
A 		80.2
(3)
A 		68.5
(2.1)
A 		76
B 28.4
(-1.8)
A 		15.7
(-2.9)
A 		14.7
(-3)
A 		24.9
(-2.1)
A 		53.3
(0.4)
A 		82.9
(3)
A 		68
C 6.7
(-2.8)
A 		74.9
(3)
A 		4.2
(-3)
A 		42.5
(0.3)
A 		14.4
(-2.1)
A 		62
(1.9)
A 		71
avr 13.1
(-3) 		33.7
(-0.9) 		19.7
(-2.3) 		27.1
(-1.6) 		49.3
(0.7) 		71.1
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.5
(3)
A 		6.7
(-0.9)
A 		4.1
(-3)
A 		5.9
(-1.5)
A 		7
B 6.1
(-1.6)
A 		4.1
(-2.4)
A 		2.5
(-3)
A 		18.3
(3)
A 		16
C 11.1
(-0.4)
A 		4.2
(-2.4)
A 		2.3
(-3)
A 		22.6
(3)
A 		20
avr 9.6
(0.1) 		5
(-2) 		3
(-3) 		15.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 0.8
(-3)
A 		3.8
(-2.2)
A 		8.8
(-0.9)
A 		3.5
(-2.3)
A 		24.2
(3)
A 		16.7
(1.1)
A 		23
B 9.9
(-1.6)
A 		5.2
(-2.6)
A 		3.6
(-3)
A 		6.6
(-2.3)
A 		21.6
(1)
A 		30.9
(3)
A 		27
C 2.5
(-2.6)
A 		22.9
(3)
A 		1.1
(-3)
A 		8.5
(-1)
A 		4.7
(-2)
A 		20.8
(2.4)
A 		22
avr 4.4
(-3) 		10.6
(-1) 		4.5
(-3) 		6.2
(-2.4) 		16.8
(1) 		22.8
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3838
Sequence Type Exemplar sequence
Representative Public ID Y38F1A.7 NCBI
Target Description Y38F1A.7 /REP_DB=WormBase Gene ID /WP=CE21612 /TR=Q9XWM3 /GB=CAA21632.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064364 NCBI Caenorhabditis elegans Y38F1A.7 (Y38F1A.7) mRNA, complete cds. 11/11 None
SNAP00000020284 ENSEMBL cdna:SNAP chromosome:CEL140:II:12996941:12997701:-1 11/11 None
GENEFINDER00000020290 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12996941:12997701:-1 11/11 None
Y38F1A.7 ENSEMBL cdna:known chromosome:CEL140:II:12996941:12997701:-1 gene:Y38F1A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12996937-12997698(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38F1A.7
Entrez Gene 189673 Entrez gene
SwissProt Q9XWM3 EMBL-EBI
WormBase CE21612 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21632 Hypothetical protein Y38F1A.7 [Caenorhabditis elegans] ref|NP_496765.1| Y38F1A.7 [Caenorhabditis elegans] 2.0E-73
blast CAE59407 Hypothetical protein CBG02771 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496765.1 1 44-66
Y38F1A.7 1 44-66
SNAP00000020284 1 44-66
GENEFINDER00000020290 1 44-66
Sequence
Target Sequence 
>C. ELEGANS:184065_AT
ccactactgctcgacttggagccaaaactcctggacttcaacatcttaaaccttggattt
tcagatcctcaaaatggcccgtacagtgatggattgagtgttgtgactggtcaagttcag
gagacagttgacgtttttatggctattatcctggtcatgattgtcatttttctagctgtt
catctcttcattcgattccactacaaggcaaaaaccgagtatgccctcaacgagctgcgg
gagaaattcgacaaaaaccccaatggttcatctgcatttgctctgccaaaggatccgaaa
aaggcaggtgattctgctccaaaaccagttgagattttgatggagccggagcaacttgct
ccgatggttcactacattgcaatggcgccacctggaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACTACTGCTCGACTTGGAGCCAA 178 275 19 Antisense
AAACTCCTGGACTTCAACATCTTAA 519 127 43 Antisense
AGATCCTCAAAATGGCCCGTACAGT 450 65 81 Antisense
GGCTATTATCCTGGTCATGATTGTC 592 537 159 Antisense
TCTCTTCATTCGATTCCACTACAAG 393 613 201 Antisense
GCAAAAACCGAGTATGCCCTCAACG 410 317 226 Antisense
TGCCCTCAACGAGCTGCGGGAGAAA 694 583 240 Antisense
ACCCCAATGGTTCATCTGCATTTGC 108 91 275 Antisense
GCATTTGCTCTGCCAAAGGATCCGA 80 309 292 Antisense
TTGCTCCGATGGTTCACTACATTGC 553 701 374 Antisense
CATTGCAATGGCGCCACCTGGAAAA 690 213 393 Antisense
Sequence Source Affymetrix Proprietary Database