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[184064_s_at]

Description W03B1.9 /REP_DB=WormBase Gene ID /WP=CE14504 /TR=O45886 /GB=AAC24439.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 49      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 11.3
(-3)
A 		45.2
(3)
A 		27.4
(-0.2)
A 		13.5
(-2.6)
A 		34
B 10.7
(-3)
A 		69.8
(1.2)
A 		94.7
(3)
A 		11.4
(-3)
A 		84
C 12.9
(-3)
A 		19.7
(3)
A 		14.7
(-1.4)
A 		14.7
(-1.4)
A 		7
avr 11.6
(-3) 		44.9
(2.9) 		45.6
(3) 		13.2
(-2.7) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 13.2
(-0.8)
A 		18.3
(3)
A 		10.3
(-3)
A 		11.3
(-2.3)
A 		13.2
(-0.8)
A 		16.1
(1.4)
A 		8
B 11.2
(-3)
A 		13
(-2.8)
A 		13.3
(-2.7)
A 		61
(3)
A 		14.7
(-2.6)
A 		15.9
(-2.4)
A 		50
C 22.8
(3)
A 		12.4
(-2.2)
A 		10.9
(-3)
A 		14.5
(-1.2)
A 		12.3
(-2.3)
A 		14.1
(-1.4)
A 		12
avr 15.7
(-1.6) 		14.6
(-1.9) 		11.5
(-3) 		28.9
(3) 		13.4
(-2.3) 		15.4
(-1.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 4.1
(-1.4)
A 		9.8
(3)
A 		7.2
(1)
A 		2
(-3)
A 		8
B 3.4
(-2.7)
A 		17.2
(1.5)
A 		22
(3)
A 		2.4
(-3)
A 		20
C 4.3
(0.4)
A 		5.7
(3)
A 		5.1
(1.9)
A 		2.5
(-3)
A 		3
avr 3.9
(-1.9) 		10.9
(2.7) 		11.4
(3) 		2.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.4
(-2.7)
A 		6.5
(3)
A 		2.2
(-3)
A 		2.9
(-2)
A 		4
(-0.5)
A 		3.9
(-0.6)
A 		4
B 3.9
(-2.7)
A 		4.3
(-2.5)
A 		3.2
(-3)
A 		16.2
(3)
A 		6
(-1.7)
A 		5.9
(-1.8)
A 		13
C 8.5
(3)
A 		3.8
(-1.9)
A 		2.8
(-3)
A 		2.9
(-2.9)
A 		4
(-1.7)
A 		4.7
(-1)
A 		6
avr 4.9
(-0.1) 		4.9
(-0.1) 		2.7
(-3) 		7.3
(3) 		4.7
(-0.4) 		4.8
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184064_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10798
Sequence Type Exemplar sequence
Representative Public ID W03B1.9 NCBI
Target Description W03B1.9 /REP_DB=WormBase Gene ID /WP=CE14504 /TR=O45886 /GB=AAC24439.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068146(11), NM_068147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068146 NCBI Caenorhabditis elegans W03B1.5 (W03B1.5) mRNA, complete cds. 11/11 None
NM_068147 NCBI Caenorhabditis elegans W03B1.9 (W03B1.9) mRNA, complete cds. 11/11 None
SNAP00000035761 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4348081:4351841:1 11/11 None
SNAP00000035763 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4352611:4356863:-1 11/11 None
GENEFINDER00000035764 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4348439:4351841:1 11/11 None
GENEFINDER00000035765 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4352611:4356013:-1 11/11 None
W03B1.5 ENSEMBL cdna:known chromosome:CEL140:IV:4348439:4351841:1 gene:W03B1.5 11/11 None
W03B1.9 ENSEMBL cdna:known chromosome:CEL140:IV:4352611:4356912:-1 gene:W03B1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4348556-4351847(+) 86.96 88.43
chrIV:4352616-4356870(-) 98.42 99.89
Public Domain and Genome References
Gene Title

Ensembl W03B1.5
W03B1.9
Entrez Gene 189144 Entrez gene
189148 Entrez gene
SwissProt O45885 EMBL-EBI
O45886 EMBL-EBI
WormBase CE14496 Wormbase
CE14504 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24433 Hypothetical protein W03B1.5 [Caenorhabditis elegans] ref|NP_500547.1| W03B1.5 [Caenorhabditis elegans] 0.0
blast AAC24439 Hypothetical protein W03B1.9 [Caenorhabditis elegans] ref|NP_500548.1| W03B1.9 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184064_S_AT
caagttggtcttgttggccgagttccaccaccgccaccaccgccaccaccacgtcgacgt
tctcgctctcgtgatcgtcccagacttgtcttctccaacatcggaggttcagctcgtcgt
agaactcgttcagctccacctgctatccaagatgttccagcggtgcctgtgagaagaagt
gattcgatgctaactaatccaccatctccagtcggtactcgtaccggtgcagtgttcact
gccactttgccaatgatcactcctatcggaggaccatcagctgcttcccaaatcggtggt
acagctcccgtgacaactgaacctgcaacaagtgtgctgaatcgaggattcattgagaca
cttacttctacttctcgagcaacaatcggatcttcagagtctagaagattgtcgactgct
tcacaagcatcgacatcattgaacagtgagatgactatccaaacaacagcaactgcatcg
ccggaacgtcttccagctcctccaggaaatcccccagcaagagttgcaccttcttctctc
aatgagcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTTGGTCTTGTTGGCCGAGTTC 317 183 1321 Antisense
AACATCGGAGGTTCAGCTCGTCGTA 68 135 1417 Antisense
GCTCGTCGTAGAACTCGTTCAGCTC 314 299 1432 Antisense
ATGTTCCAGCGGTGCCTGTGAGAAG 356 47 1472 Antisense
GATGCTAACTAATCCACCATCTCCA 695 411 1506 Antisense
GTACTCGTACCGGTGCAGTGTTCAC 425 459 1535 Antisense
TGCAGTGTTCACTGCCACTTTGCCA 170 579 1548 Antisense
GCTGCTTCCCAAATCGGTGGTACAG 330 297 1600 Antisense
CTTACTTCTACTTCTCGAGCAACAA 147 223 1681 Antisense
GGAAATCCCCCAGCAAGAGTTGCAC 375 527 1825 Antisense
GCACCTTCTTCTCTCAATGAGCAGA 201 315 1846 Antisense
Sequence Source Affymetrix Proprietary Database