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[184063_at]

Description ZK1067.4 /REP_DB=WormBase Gene ID /WP=CE03841 /TR=Q23387 /GB=CAA93883.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 8.2
(-3)
A 		40.7
(1.4)
A 		28.2
(-0.3)
A 		52.9
(3)
A 		45
B 45.2
(2.6)
A 		30
(0.6)
A 		2.1
(-3)
A 		48.4
(3)
P 		46
C 8.2
(-3)
A 		50.2
(0.5)
P 		33.4
(-0.9)
A 		79.8
(3)
A 		72
avr 20.5
(-3) 		40.3
(-0) 		21.2
(-2.9) 		60.4
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 5.1
(-2.4)
A 		2
(-3)
A 		27.1
(2.1)
A 		31.8
(3)
A 		30.5
(2.7)
A 		5.5
(-2.3)
A 		30
B 33.2
(3)
A 		4
(-2.5)
A 		7.1
(-2)
A 		1.6
(-3)
A 		5.1
(-2.3)
A 		7.2
(-1.9)
A 		32
C 9.2
(-1.9)
A 		43.5
(3)
A 		34.4
(1.7)
A 		39.7
(2.5)
A 		1.8
(-3)
A 		16.1
(-0.9)
A 		42
avr 15.8
(-0.5) 		16.5
(-0.2) 		22.9
(2.4) 		24.4
(3) 		12.5
(-1.8) 		9.6
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3
(-3)
A 		8.8
(3)
A 		7.4
(1.6)
A 		7.7
(1.9)
A 		6
B 14.4
(3)
A 		7.4
(-0)
A 		0.5
(-3)
A 		10.3
(1.2)
P 		14
C 2.7
(-3)
A 		14.4
(3)
P 		11.6
(1.6)
A 		13.5
(2.5)
A 		12
avr 6.7
(-2.7) 		10.2
(2.6) 		6.5
(-3) 		10.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		0.7
(-3)
A 		5.9
(0.7)
A 		8.1
(2.2)
A 		9.2
(3)
A 		1.3
(-2.6)
A 		9
B 11.5
(3)
A 		1.3
(-2.5)
A 		1.7
(-2.3)
A 		0.4
(-3)
A 		2.1
(-2.1)
A 		2.7
(-1.8)
A 		11
C 3.4
(-1.7)
A 		13.3
(3)
A 		8.8
(0.9)
A 		8
(0.5)
A 		0.6
(-3)
A 		5.4
(-0.7)
A 		13
avr 5.3
(2.5) 		5.1
(2) 		5.5
(3) 		5.5
(3) 		4
(-0.8) 		3.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3831
Sequence Type Exemplar sequence
Representative Public ID ZK1067.4 NCBI
Target Description ZK1067.4 /REP_DB=WormBase Gene ID /WP=CE03841 /TR=Q23387 /GB=CAA93883.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171027(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171027 NCBI Caenorhabditis elegans ZK1067.8 (ZK1067.8) mRNA, complete cds. 9/11 None
SNAP00000014741 ENSEMBL cdna:SNAP chromosome:CEL140:II:9211028:9222645:1 11/11 None
GENEFINDER00000014748 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9210307:9222645:1 11/11 None
ZK1067.8 ENSEMBL cdna:known chromosome:CEL140:II:9213613:9214331:1 gene:ZK1067.8 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9210303-9214328(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1067.8
Entrez Gene 266862 Entrez gene
SwissProt Q8MPS0 EMBL-EBI
WormBase CE32288 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93884 Hypothetical protein ZK1067.2 [Caenorhabditis elegans] ref|NP_495964.1| ZK1067.2 [Caenorhabditis elegans] 0.0
blast CAE57867 Hypothetical protein CBG00906 [Caenorhabditis briggsae] 0.0
blast CAA93883 Hypothetical protein ZK1067.4 [Caenorhabditis elegans] ref|NP_495963.2| ZK1067.4 [Caenorhabditis elegans] 0.0
blast CAD36503 Hypothetical protein ZK1067.8 [Caenorhabditis elegans] ref|NP_741032.2| ZK1067.8 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014748 3 28-50,70-89,255-277
Sequence
Target Sequence 
>C. ELEGANS:184063_AT
aatacttcaaaccaaccaatccatctatctgacaagctaatgtccagagataaaccacct
caacgtgaggttggcggacgtcggttgccctacgaaatgggttcgttgaagttcgacgaa
gacccgttccgcggacagcgccggcgtccgtggatgtgcttcagaatcggctatccgaca
agcgagttctcatcagagcacttcatgaaattcgtgaaaaggtgtcacacttcgatgata
gaagtaggtattcttctcgatgatgaacgggaattcctgcaatatcaagaagtcagggaa
gattatcttcttctgaaaaagctcatcgaggaaggtctgcagaagtgtgaaacgatctat
gaaaaaggaccgctgtcgactccggttgtttttttcattttagaccagtgcgacgaagac
gaagtccaaaacatgctggatatgtttagggagtcttgttatatcttccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACTTCAAACCAACCAATCCATC 155 173 1459 Antisense
AACCAATCCATCTATCTGACAAGCT 588 145 1472 Antisense
ACGTGAGGTTGGCGGACGTCGGTTG 74 3 1521 Antisense
TGAAGTTCGACGAAGACCCGTTCCG 118 573 1565 Antisense
GATGTGCTTCAGAATCGGCTATCCG 426 409 1611 Antisense
TCGGCTATCCGACAAGCGAGTTCTC 526 605 1625 Antisense
AAGCGAGTTCTCATCAGAGCACTTC 504 149 1638 Antisense
AAGCTCATCGAGGAAGGTCTGCAGA 251 151 1777 Antisense
TGAAAAAGGACCGCTGTCGACTCCG 240 571 1818 Antisense
TTTTCATTTTAGACCAGTGCGACGA 62 677 1850 Antisense
AGGGAGTCTTGTTATATCTTCCATA 230 59 1906 Antisense
Sequence Source Affymetrix Proprietary Database