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[184062_at]

Description B0336.5 /REP_DB=WormBase Gene ID /WP=CE26356 /TR=Q17483 /GB=AAK18862.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 88      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 260.9
(-0.8)
P 		241.7
(-3)
P 		285.1
(1.9)
P 		295.2
(3)
P 		54
B 270.3
(-1.6)
P 		261.9
(-3)
M 		265.3
(-2.4)
P 		297.8
(3)
P 		36
C 314.8
(-0.1)
P 		277.7
(-1.9)
A 		254.7
(-3)
P 		379.3
(3)
P 		125
avr 282
(-1) 		260.4
(-3) 		268.4
(-2.2) 		324.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 206.6
(-2.8)
P 		197.7
(-3)
P 		252
(-1.8)
P 		230.8
(-2.3)
P 		359.4
(0.5)
P 		474.1
(3)
P 		276
B 201.4
(-3)
P 		307.6
(-1)
P 		271.1
(-1.7)
P 		330.7
(-0.6)
P 		408.1
(0.9)
P 		522.4
(3)
P 		321
C 226.4
(-3)
P 		304
(-1.1)
P 		247.4
(-2.5)
P 		259.7
(-2.2)
P 		344.6
(-0.1)
P 		473.5
(3)
P 		247
avr 211.5
(-3) 		269.8
(-1.7) 		256.8
(-2) 		273.7
(-1.7) 		370.7
(0.4) 		490
(3) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 95
(3)
P 		52.5
(-1.9)
P 		74.5
(0.6)
P 		43.2
(-3)
P 		52
B 86.2
(3)
P 		64.7
(-2.2)
M 		61.5
(-3)
P 		63.5
(-2.5)
P 		25
C 104.2
(3)
P 		79.8
(-0.6)
A 		88.8
(0.7)
P 		64
(-3)
P 		40
avr 95.1
(3) 		65.7
(-1.6) 		74.9
(-0.2) 		56.9
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 38.1
(-3)
P 		70.3
(-0.5)
P 		54.9
(-1.7)
P 		58.5
(-1.4)
P 		108.5
(2.5)
P 		115.4
(3)
P 		77
B 70.1
(-2.8)
P 		102.4
(-1.3)
P 		65.8
(-3)
P 		87.6
(-2)
P 		165.8
(1.7)
P 		194.8
(3)
P 		129
C 83.9
(-1.2)
P 		92.8
(-0.7)
P 		63
(-2.4)
P 		52.2
(-3)
P 		111.5
(0.3)
P 		158.5
(3)
P 		106
avr 64
(-2.8) 		88.5
(-1.3) 		61.2
(-3) 		66.1
(-2.7) 		128.6
(1.3) 		156.2
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7942
Sequence Type Exemplar sequence
Representative Public ID B0336.5 NCBI
Target Description B0336.5 /REP_DB=WormBase Gene ID /WP=CE26356 /TR=Q17483 /GB=AAK18862.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065824(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065824 NCBI Caenorhabditis elegans B0336.5 (B0336.5) mRNA, complete cds. 10/11 None
GENEFINDER00000008894 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5692963:5693739:1 10/11 None
B0336.5 ENSEMBL cdna:known chromosome:CEL140:III:5692911:5693814:1 gene:B0336.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008871 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5692961-5693738(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0336.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18862 Hypothetical protein B0336.5a [Caenorhabditis elegans] ref|NP_498225.1| B0336.5 [Caenorhabditis elegans] 1.0E-106
blast AAZ82852 Hypothetical protein B0336.5b [Caenorhabditis elegans] 1.0E-104
blast T15332 hypothetical protein B0336.5 - Caenorhabditis elegans 3.0E-96
Sequence
Target Sequence 
>C. ELEGANS:184062_AT
tgacgttctcgcacaaattgccggtctggcgaaagctgcagcagagcttgaaaatgattt
ctcgacggatagtgaaatgcaacaagattccgagatttgcgatgaagtcgatgcggagct
ttttgacgatttcgaaacaaagaagttgcagccatcatctcgaaaggaaagttcaggaac
gagccgtcgaacgagaatggcacaccgagagcttcaaggcctccagttcgcgaatccagg
agatgaaatgtctcgatttttgcccgactctgtggatattattagcaccaaccgctcgaa
acgtgtagccgcggagaagcaggcggatctgagagacgaacctttgcatcatgacaaaac
aggaaaactttcggttaccgcaaaaggacagactttgtttttcgatctttgtgattgtct
cgtggtggagtgtgatgggtgccattggccatgtaagcagtgcaaatctcgcaaatgtct
catcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTTCTCGCACAAATTGCCGGT 31 569 24 Antisense
TTGCCGGTCTGGCGAAAGCTGCAGC 323 699 41 Antisense
AGAAGTTGCAGCCATCATCTCGAAA 259 75 164 Antisense
AATGGCACACCGAGAGCTTCAAGGC 249 161 219 Antisense
GCCTCCAGTTCGCGAATCCAGGAGA 74 283 242 Antisense
GATTTTTGCCCGACTCTGTGGATAT 271 429 278 Antisense
GCACCAACCGCTCGAAACGTGTAGC 678 309 308 Antisense
GAGAGACGAACCTTTGCATCATGAC 124 395 354 Antisense
GATCTTTGTGATTGTCTCGTGGTGG 54 421 427 Antisense
GGGTGCCATTGGCCATGTAAGCAGT 553 497 460 Antisense
GCAAATCTCGCAAATGTCTCATCGG 87 319 485 Antisense
Sequence Source Affymetrix Proprietary Database