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[184061_at]

Description T26A5.5 /REP_DB=WormBase Gene ID /WP=CE00700 /TR=Q22796 /GB=AAC77508.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      6grp_highest_nonorm > 81      6grp_total > 04      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 357.1
(3)
P 		191
(-3)
A 		206.6
(-2.4)
A 		220
(-2)
P 		166
B 350.8
(3)
P 		198.8
(-2.3)
M 		183.5
(-2.8)
P 		177.5
(-3)
P 		173
C 403.2
(3)
P 		224.6
(-1.9)
M 		185.8
(-3)
P 		200.4
(-2.6)
P 		217
avr 370.4
(3) 		204.8
(-2.6) 		192
(-3) 		199.3
(-2.8) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 266.7
(0)
P 		352.2
(3)
P 		181
(-3)
P 		224.1
(-1.5)
P 		265.3
(-0)
P 		291.9
(0.9)
P 		171
B 312.1
(3)
P 		265.7
(0.3)
P 		210
(-3)
P 		272.3
(0.7)
P 		235.6
(-1.5)
P 		251.4
(-0.6)
P 		102
C 337.3
(3)
P 		273.1
(0.9)
P 		323.8
(2.6)
P 		305
(2)
P 		215.8
(-0.9)
P 		152
(-3)
P 		185
avr 305.4
(3) 		297
(2.3) 		238.3
(-2.5) 		267.1
(-0.1) 		238.9
(-2.4) 		231.8
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 130
(3)
P 		41.5
(-2.4)
A 		54
(-1.7)
A 		32.2
(-3)
P 		98
B 111.9
(3)
P 		49.1
(-2.1)
M 		42.5
(-2.6)
P 		37.8
(-3)
P 		74
C 133.5
(3)
P 		64.6
(-1.1)
M 		64.8
(-1.1)
P 		33.8
(-3)
P 		100
avr 125.1
(3) 		51.7
(-1.9) 		53.8
(-1.7) 		34.6
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 49.2
(-2.3)
P 		125.3
(3)
P 		39.4
(-3)
P 		56.8
(-1.8)
P 		80
(-0.2)
P 		71.1
(-0.8)
P 		86
B 108.6
(3)
P 		88.4
(0.9)
P 		51
(-3)
P 		72.1
(-0.8)
P 		95.7
(1.7)
P 		93.7
(1.4)
P 		58
C 125
(3)
P 		83.3
(-0.4)
P 		82.4
(-0.4)
P 		61.3
(-2.2)
P 		69.8
(-1.5)
P 		50.9
(-3)
P 		74
avr 94.3
(2.3) 		99
(3) 		57.6
(-3) 		63.4
(-2.2) 		81.8
(0.5) 		71.9
(-0.9) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6190
Sequence Type Exemplar sequence
Representative Public ID T26A5.5 NCBI
Target Description T26A5.5 /REP_DB=WormBase Gene ID /WP=CE00700 /TR=Q22796 /GB=AAC77508.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066017 NCBI Caenorhabditis elegans T26A5.5a (T26A5.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000033291 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6454420:6459341:1 11/11 None
SNAP00000033264 ENSEMBL cdna:SNAP chromosome:CEL140:III:6457383:6459341:1 11/11 None
T26A5.5a ENSEMBL cdna:known chromosome:CEL140:III:6454639:6459947:1 gene:T26A5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175919 2 1 NM_066017 174118_at (11), 184061_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6454637-6459340(+) 92.62 100.0
Public Domain and Genome References
Ensembl T26A5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498418 T26A5.5a [Caenorhabditis elegans] gb|AAN65291.1| Hypothetical protein T26A5.5a [Caenorhabditis elegans] 0.0
blast T34385 hypothetical protein T26A5.5 - Caenorhabditis elegans 0.0
blast NP_498419 T26A5.5b [Caenorhabditis elegans] gb|AAN65292.1| Hypothetical protein T26A5.5b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 4.3E-7
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 3.4E-6
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 4.3E-7
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 3.4E-6
Sequence
Target Sequence 
>C. ELEGANS:184061_AT
atctccagcaatggtctcatcgacaaacgaatatcagttacgaaaacacatgtcgagcga
acggcgaagcagtgatgcaggatcggcaatgaaaaagggcgtatatatgcctgcaatgtc
tcgtcaggataagatgattgctgagggagcatctgctccctcgtcacgtcactcctcgat
ctcatctgaacgtcgtccgagtttcatacctgatttcaactcttctcgtaattcatctat
tgatacaccatacactccgactactgtaacaccttcaagatcttcttggctcccgaacac
gtcgtccattaatcgtcactcaattgaagatgattctccaatagatgttgtcaatgattc
attatcaccaataaatatagccagctcgccgacctacccaactgcaatcactccaccacc
ggttactctcagcgatttgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCAGCAATGGTCTCATCGACA 584 33 2649 Antisense
ATATATGCCTGCAATGTCTCGTCAG 504 17 2751 Antisense
TCCTCGATCTCATCTGAACGTCGTC 202 593 2821 Antisense
TGAACGTCGTCCGAGTTTCATACCT 459 573 2835 Antisense
TCATACCTGATTTCAACTCTTCTCG 196 621 2852 Antisense
CAACTCTTCTCGTAATTCATCTATT 600 187 2865 Antisense
TCTATTGATACACCATACACTCCGA 490 613 2884 Antisense
CTCCGACTACTGTAACACCTTCAAG 242 235 2903 Antisense
TTCAAGATCTTCTTGGCTCCCGAAC 34 685 2922 Antisense
ACACGTCGTCCATTAATCGTCACTC 642 107 2945 Antisense
ACCGGTTACTCTCAGCGATTTGAAG 553 87 3066 Antisense
Sequence Source Affymetrix Proprietary Database