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[184060_at]

Description C27D6.7 /REP_DB=WormBase Gene ID /WP=CE06887 /GEN=srb-4 /GB=AAK68208.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 06      6grp_total > 31      4grp_total > 21      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 26.7
(-0.7)
P 		39
(0.5)
P 		3.7
(-3)
A 		63.4
(3)
P 		60
B 48.8
(3)
P 		36.8
(-0.4)
A 		27.4
(-3)
A 		34.3
(-1.1)
A 		21
C 54.9
(0.6)
P 		25.9
(-3)
P 		32.3
(-2.2)
A 		74.5
(3)
P 		49
avr 43.5
(0.7) 		33.9
(-0.9) 		21.1
(-3) 		57.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 64.1
(3)
P 		24.5
(-3)
A 		50.2
(0.9)
P 		36.7
(-1.2)
A 		60.1
(2.4)
P 		37.3
(-1.1)
A 		40
B 20.4
(-3)
A 		37.5
(0.9)
P 		46.9
(3)
P 		41
(1.7)
P 		23
(-2.4)
P 		34.1
(0.1)
P 		27
C 27.3
(-1.7)
M 		55.5
(3)
P 		19.6
(-3)
A 		35
(-0.4)
A 		23.9
(-2.3)
A 		29.5
(-1.3)
A 		36
avr 37.3
(1) 		39.2
(3) 		38.9
(2.7) 		37.6
(1.3) 		35.7
(-0.7) 		33.6
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.7
(3)
P 		8.5
(2.2)
P 		1
(-3)
A 		9.3
(2.7)
P 		9
B 15.6
(3)
P 		9.1
(-1.2)
A 		6.3
(-3)
A 		7.3
(-2.4)
A 		9
C 18.2
(3)
P 		7.4
(-3)
P 		11.3
(-0.8)
A 		12.6
(-0.1)
P 		11
avr 14.5
(3) 		8.3
(-1.5) 		6.2
(-3) 		9.7
(-0.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.8
(-1)
P 		8.7
(-3)
A 		10.9
(-1.6)
P 		9.3
(-2.6)
A 		18.1
(3)
P 		9.1
(-2.7)
A 		9
B 7.1
(-3)
A 		12.5
(2.8)
P 		11.4
(1.6)
P 		10.8
(1)
P 		9.4
(-0.5)
P 		12.7
(3)
P 		6
C 10.1
(-0.4)
M 		16.9
(3)
P 		5
(-3)
A 		7
(-2)
A 		7.7
(-1.6)
A 		9.9
(-0.5)
A 		12
avr 9.7
(-1.9) 		12.7
(3) 		9.1
(-2.8) 		9
(-3) 		11.7
(1.4) 		10.6
(-0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4421
Sequence Type Exemplar sequence
Representative Public ID C27D6.7 NCBI
Target Description C27D6.7 /REP_DB=WormBase Gene ID /WP=CE06887 /GEN=srb-4 /GB=AAK68208.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000035753 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5164239:5171013:-1 11/11 None
C27D6.7 ENSEMBL cdna:known chromosome:CEL140:II:5164239:5165001:-1 gene:C27D6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5164236-5164999(-) 100.0 100.0
Public Domain and Genome References
Ensembl C27D6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15653 hypothetical protein C27D6.2 - Caenorhabditis elegans 0.0
blast NP_494965 Serpentine Receptor, class B (beta) family member (srb-1) [Caenorhabditis elegans] gb|AAK68205.1| Serpentine receptor, class b (beta) protein 1 [Caenorhabditis elegans] sp|Q95ZY0|SRB1_CAEEL Serpentine receptor class beta-1 (Protein srb-1) prf||2123261N chemosensory receptor 1.0E-102
blast 2123261R chemosensory receptor 3.0E-79
blast 2123261R chemosensory receptor 3.0E-78
blast T15653 hypothetical protein C27D6.2 - Caenorhabditis elegans 3.0E-74
blast CAE59057 Hypothetical protein CBG02340 [Caenorhabditis briggsae] 4.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 2.7E-105
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 6.1E-68
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 2.6E-34
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.3E-51
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.3E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
C27D6.7 4 15-37,54-76,96-118,138-155
GENEFINDER00000035753 15 20-42,62-84,104-126,139-161,186-208,215-237,242-264,277-299,325-347,416-434,449-468,488-510,525-547,567-589,609-626
Sequence
Target Sequence 
>C. ELEGANS:184060_AT
gattgaacagtgtgagctcgcttatcagcttaataatcatccaatttacacaatttcgga
actatggtcatgcctagtttcactttttgccattccatcactaatttactttttaactcg
aaaagttatgcttatgagattccatggaaatttgaaagttttacttatggcgtatttctc
gagccttctactactttccacagtgacttttttaggatatatatatcaaatcactagttc
acaagcctcaaattcaaagtgcggtcttctattagaatcaaaaatatttaaactttcaca
cattccattactattcatgttaacatgttcactgcttctaccaattggtttttcaattga
aagaagtattgcattaagaatggccaaaaaatatgagcatgttcggacatttctcggacc
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGAACAGTGTGAGCTCGCTTAT 84 435 15 Antisense
AATTTCGGAACTATGGTCATGCCTA 192 175 66 Antisense
GTCATGCCTAGTTTCACTTTTTGCC 31 467 81 Antisense
CTTTTTGCCATTCCATCACTAATTT 604 221 97 Antisense
TATGGCGTATTTCTCGAGCCTTCTA 331 653 180 Antisense
TTCTACTACTTTCCACAGTGACTTT 396 689 200 Antisense
AAATCACTAGTTCACAAGCCTCAAA 203 117 242 Antisense
AAGCCTCAAATTCAAAGTGCGGTCT 281 149 257 Antisense
AACTTTCACACATTCCATTACTATT 319 139 305 Antisense
GTTAACATGTTCACTGCTTCTACCA 27 447 333 Antisense
CATGTTCGGACATTTCTCGGACCAA 152 211 412 Antisense
Sequence Source Affymetrix Proprietary Database