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[184059_at]

Description F59A7.1 /REP_DB=WormBase Gene ID /WP=CE20896 /TR=O16285 /GB=AAD34668.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 57      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 67.8
(-3)
A 		94
(0.5)
P 		110.9
(2.8)
P 		112.2
(3)
M 		44
B 86.2
(1.8)
A 		88.3
(1.9)
P 		105.6
(3)
P 		8.8
(-3)
A 		97
C 75.7
(-2.9)
A 		129.1
(3)
P 		117.8
(1.8)
P 		74.8
(-3)
A 		54
avr 76.6
(-1.5) 		103.8
(2) 		111.4
(3) 		65.3
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 75.8
(3)
P 		46
(-0.9)
A 		65
(1.6)
P 		59.7
(0.9)
P 		40.2
(-1.7)
A 		30.5
(-3)
A 		45
B 43.7
(-1.2)
A 		79.4
(3)
M 		71.9
(2.1)
P 		43.1
(-1.3)
A 		39
(-1.7)
A 		28.2
(-3)
A 		51
C 31.7
(-2)
A 		59.4
(3)
A 		42.5
(-0.1)
A 		45.9
(0.5)
M 		28.8
(-2.6)
A 		26.4
(-3)
A 		33
avr 50.4
(1) 		61.6
(3) 		59.8
(2.7) 		49.6
(0.8) 		36
(-1.6) 		28.4
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 24.7
(1)
A 		20.4
(-1.1)
P 		29
(3)
P 		16.4
(-3)
M 		13
B 27.5
(3)
A 		21.8
(1.7)
P 		24.5
(2.3)
P 		1.9
(-3)
A 		26
C 25
(-0.4)
A 		37.1
(2.2)
P 		41
(3)
P 		12.6
(-3)
A 		28
avr 25.7
(1.4) 		26.4
(1.6) 		31.5
(3) 		10.3
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 14
(1.4)
P 		16.4
(3)
A 		14.2
(1.5)
P 		15.1
(2.1)
P 		12.1
(0.1)
A 		7.4
(-3)
A 		9
B 15.2
(-1.2)
A 		26.4
(3)
M 		17.5
(-0.4)
P 		11.4
(-2.7)
A 		15.8
(-1)
A 		10.5
(-3)
A 		16
C 11.8
(-1.1)
A 		18.1
(3)
A 		10.8
(-1.8)
A 		9.2
(-2.8)
M 		9.3
(-2.7)
A 		8.9
(-3)
A 		9
avr 13.7
(-0.5) 		20.3
(3) 		14.2
(-0.2) 		11.9
(-1.4) 		12.4
(-1.2) 		8.9
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15026
Sequence Type Exemplar sequence
Representative Public ID F59A7.1 NCBI
Target Description F59A7.1 /REP_DB=WormBase Gene ID /WP=CE20896 /TR=O16285 /GB=AAD34668.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071145 NCBI Caenorhabditis elegans F59A7.1 (F59A7.1) mRNA, complete cds. 11/11 None
SNAP00000021249 ENSEMBL cdna:SNAP chromosome:CEL140:V:2001115:2004135:-1 11/11 None
GENEFINDER00000021267 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2001115:2004021:-1 11/11 None
F59A7.1 ENSEMBL cdna:known chromosome:CEL140:V:2001115:2004135:-1 gene:F59A7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2001114-2004135(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A7.1
Entrez Gene 186582 Entrez gene
SwissProt O16285 EMBL-EBI
WormBase CE20896 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD34668 Hypothetical protein F59A7.1 [Caenorhabditis elegans] ref|NP_503546.1| F59A7.1 [Caenorhabditis elegans] 0.0
blast AAD34668 Hypothetical protein F59A7.1 [Caenorhabditis elegans] ref|NP_503546.1| F59A7.1 [Caenorhabditis elegans] 1.0E-178
blast CAB04358 Hypothetical protein F38A1.5 [Caenorhabditis elegans] ref|NP_741307.1| F38A1.5 [Caenorhabditis elegans] 1.0E-145
blast CAB04358 Hypothetical protein F38A1.5 [Caenorhabditis elegans] ref|NP_741307.1| F38A1.5 [Caenorhabditis elegans] 1.0E-137
blast CAB04352 Hypothetical protein F38A1.4 [Caenorhabditis elegans] ref|NP_741309.2| F38A1.4 [Caenorhabditis elegans] 1.0E-134
blast CAB04352 Hypothetical protein F38A1.4 [Caenorhabditis elegans] ref|NP_741309.2| F38A1.4 [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.4E-5
Sequence
Target Sequence 
>C. ELEGANS:184059_AT
gatattcccacttgcggatcgattatcttgatcctttctaaacgtcatccgaataatgcg
gacatctcaaaaacagtatcacttgtgagacaacatcatggaataattcatgcggtttgt
tcagttgcaccgtcaggcggaacccaatcaaaagcgatgtataatttaacatccaaaacg
aatggagtgtgtaatattggagaagacggggactttgatgaactaatggattatattcct
atttatgatgctccgtatccaatttactgtgccaacccggttctctccggtcaaaacata
acggagctgccacaaatgaacattccgttttcaaatgaatattgggtggctttaacaatt
caagatcacgctcccattgattccattcggtcacttcattttttcataacaaaaacaaac
gacaagtacagcatcattgactggcaggtttacccggcgagttttaatggaattcttacc
ggtaatgggtttactttaagcccggtgacttacagtatggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTCCCACTTGCGGATCGATTA 429 427 802 Antisense
GATTATCTTGATCCTTTCTAAACGT 469 429 822 Antisense
TTCAGTTGCACCGTCAGGCGGAACC 374 687 921 Antisense
TATTCCTATTTATGATGCTCCGTAT 626 663 1035 Antisense
GCTCCGTATCCAATTTACTGTGCCA 372 299 1051 Antisense
GGTTCTCTCCGGTCAAAACATAACG 218 505 1080 Antisense
ACGGAGCTGCCACAAATGAACATTC 590 93 1102 Antisense
TAACAATTCAAGATCACGCTCCCAT 94 639 1154 Antisense
ATTCCATTCGGTCACTTCATTTTTT 634 5 1181 Antisense
TCATTGACTGGCAGGTTTACCCGGC 653 611 1235 Antisense
AAGCCCGGTGACTTACAGTATGGAA 80 145 1299 Antisense
Sequence Source Affymetrix Proprietary Database