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[184058_s_at]

Description ZC155.3 /REP_DB=WormBase Gene ID /WP=CE23442 /TR=Q23243 /GB=AAD31935.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_high_8_8 > 20      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 12      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 122.2
(3)
P 		65.8
(-3)
M 		89.6
(-0.5)
P 		121.9
(3)
P 		56
B 102.5
(-2.6)
P 		107.5
(-1.7)
P 		100.6
(-3)
P 		131.4
(3)
P 		31
C 100.1
(-1.6)
P 		126
(0.4)
P 		80.9
(-3)
P 		160.5
(3)
P 		80
avr 108.3
(-0.7) 		99.8
(-1.8) 		90.4
(-3) 		137.9
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 92.8
(-3)
P 		132.4
(-2.1)
P 		119.3
(-2.4)
P 		147.6
(-1.7)
P 		133.1
(-2)
P 		344.3
(3)
P 		252
B 102.5
(-2.5)
P 		111.7
(-2.1)
P 		91.7
(-3)
P 		132.8
(-1.1)
P 		119.8
(-1.7)
P 		221.1
(3)
P 		129
C 163.3
(-1.5)
P 		126.1
(-2.7)
P 		175.6
(-1.1)
P 		116.7
(-3)
P 		198.2
(-0.3)
P 		300.2
(3)
P 		184
avr 119.5
(-3) 		123.4
(-2.9) 		128.9
(-2.7) 		132.4
(-2.5) 		150.4
(-1.9) 		288.5
(3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 44.5
(3)
P 		14.3
(-3)
M 		23.4
(-1.2)
P 		17.8
(-2.3)
P 		30
B 32.7
(3)
P 		26.5
(-1)
P 		23.3
(-3)
P 		28
(-0)
P 		9
C 33.1
(1)
P 		36.2
(3)
P 		28.2
(-2.3)
P 		27.1
(-3)
P 		9
avr 36.8
(3) 		25.7
(-2.3) 		25
(-2.7) 		24.3
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 17.1
(-3)
P 		47.1
(-0.3)
P 		26
(-2.2)
P 		37.4
(-1.2)
P 		40.2
(-0.9)
P 		83.8
(3)
P 		67
B 35.7
(-1.7)
P 		37.2
(-1.5)
P 		22.3
(-3)
P 		35.2
(-1.7)
P 		48.7
(-0.4)
P 		82.4
(3)
P 		60
C 60.5
(-0.1)
P 		38.5
(-1.8)
P 		44.7
(-1.3)
P 		23.5
(-3)
P 		64.1
(0.2)
P 		100.5
(3)
P 		77
avr 37.8
(-2.3) 		40.9
(-2) 		31
(-3) 		32
(-2.9) 		51
(-0.9) 		88.9
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184058_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6880
Sequence Type Exemplar sequence
Representative Public ID ZC155.3 NCBI
Target Description ZC155.3 /REP_DB=WormBase Gene ID /WP=CE23442 /TR=Q23243 /GB=AAD31935.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065703(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065703 NCBI Caenorhabditis elegans ZC155.3 (ZC155.3) mRNA, complete cds. 11/11 None
SNAP00000027522 ENSEMBL cdna:SNAP chromosome:CEL140:III:5203943:5206854:-1 11/11 None
GENEFINDER00000027534 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5203943:5206851:-1 11/11 None
ZC155.3 ENSEMBL cdna:known chromosome:CEL140:III:5203670:5206868:-1 gene:ZC155.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5203941-5206850(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC155.3
Entrez Gene 175711 Entrez gene
SwissProt Q23243 EMBL-EBI
WormBase CE23442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD31935 Hypothetical protein ZC155.3 [Caenorhabditis elegans] ref|NP_498104.1| ZC155.3 [Caenorhabditis elegans] 0.0
blast H88451 protein ZC155.3 [imported] - Caenorhabditis elegans 0.0
blast CAE60036 Hypothetical protein CBG03545 [Caenorhabditis briggsae] 2.0E-78
Sequence
Target Sequence 
>C. ELEGANS:184058_S_AT
gaagtccaacgcaggcacagtactggaagagcaatctcacccgcagtttccgaaatttct
cgtagagctggaactgcgccaagttcacaattggatatgattatgggagaagaatcggat
gagtcgcaagaggcactgacgatcagagcaccgcgccaacgtgctaaaagaccaattgaa
agagtttcgagaagaaatagaagagatcaatcagatgatgactcagactctgagaacgaa
gaaagatacgctactgcgccaaaaaagtcaaaagtcaaaggaaaggctgttgtgagagca
cctaaaatgactcgggagaaatggctagaagaaatgctcaaccagtttctgaccgctcat
ggagaacaacctcttccaaagaacggtcaacgagactttgacccgacgaacattgtggag
caaacctcacgacgaaacttcaaaaacaatcagagaatcgtagacgcacagcaagctatt
atgcgtcagattggatcagttcttgatcatctcaagaggaacccgacacataatttcaag
attcctgcttctggaactgtcgaggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCCAACGCAGGCACAGTACTG 179 321 1939 Antisense
TACTGGAAGAGCAATCTCACCCGCA 363 647 1959 Antisense
TCACCCGCAGTTTCCGAAATTTCTC 611 623 1975 Antisense
CTCGTAGAGCTGGAACTGCGCCAAG 676 231 1997 Antisense
GAGGCACTGACGATCAGAGCACCGC 508 405 2068 Antisense
ACCGCGCCAACGTGCTAAAAGACCA 285 87 2088 Antisense
AATGCTCAACCAGTTTCTGACCGCT 443 165 2271 Antisense
GAGACTTTGACCCGACGAACATTGT 588 393 2330 Antisense
GGAGCAAACCTCACGACGAAACTTC 353 513 2355 Antisense
GAATCGTAGACGCACAGCAAGCTAT 539 329 2393 Antisense
CCTGCTTCTGGAACTGTCGAGGAGA 124 267 2482 Antisense
Sequence Source Affymetrix Proprietary Database