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[184057_at]

Description F35C5.11 /REP_DB=WormBase Gene ID /WP=CE15952 /TR=O45447 /GB=CAB03061.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 45      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 199.9
(3)
P 		109
(-0.3)
P 		74.2
(-1.5)
A 		34.1
(-3)
A 		166
B 210.9
(3)
P 		103.3
(-0.1)
P 		45.3
(-1.8)
P 		2.5
(-3)
A 		208
C 229.2
(3)
P 		131.5
(0.1)
P 		59.5
(-2.1)
A 		29.8
(-3)
A 		199
avr 213.3
(3) 		114.6
(-0.1) 		59.7
(-1.8) 		22.1
(-3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 223.5
(3)
P 		172
(1.4)
P 		103.1
(-0.7)
P 		99.3
(-0.8)
P 		31.2
(-2.9)
A 		28.9
(-3)
A 		195
B 218.4
(3)
P 		167.2
(1.5)
P 		126.7
(0.2)
P 		85.1
(-1)
P 		38.6
(-2.4)
P 		19.9
(-3)
A 		199
C 302.3
(3)
P 		165.9
(-0.1)
P 		88.8
(-1.8)
A 		35.7
(-3)
A 		69.8
(-2.2)
P 		37.2
(-3)
A 		267
avr 248.1
(3) 		168.4
(0.8) 		106.2
(-0.9) 		73.4
(-1.8) 		46.5
(-2.5) 		28.7
(-3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 72.8
(3)
P 		23.7
(-1.3)
P 		19.4
(-1.7)
A 		5
(-3)
A 		68
B 67.3
(3)
P 		25.5
(-0.8)
P 		10.5
(-2.1)
P 		0.5
(-3)
A 		67
C 75.9
(3)
P 		37.8
(-0.2)
P 		20.7
(-1.7)
A 		5
(-3)
A 		71
avr 72
(3) 		29
(-0.8) 		16.9
(-1.8) 		3.5
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 41.2
(0.8)
P 		61.2
(3)
P 		22.5
(-1.3)
P 		25.2
(-1)
P 		9.4
(-2.7)
A 		7
(-3)
A 		54
B 76
(3)
P 		55.6
(1.2)
P 		30.8
(-1)
P 		22.5
(-1.7)
P 		15.7
(-2.3)
P 		7.4
(-3)
A 		69
C 112
(3)
P 		50.6
(-0.5)
P 		22.6
(-2.1)
A 		7.2
(-3)
A 		22.6
(-2.1)
P 		12.4
(-2.7)
A 		105
avr 76.4
(3) 		55.8
(1.2) 		25.3
(-1.5) 		18.3
(-2.2) 		15.9
(-2.4) 		8.9
(-3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3794
Sequence Type Exemplar sequence
Representative Public ID F35C5.11 NCBI
Target Description F35C5.11 /REP_DB=WormBase Gene ID /WP=CE15952 /TR=O45447 /GB=CAB03061.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064347 NCBI Caenorhabditis elegans F35C5.11 (F35C5.11) mRNA, complete cds. 11/11 None
SNAP00000007552 ENSEMBL cdna:SNAP chromosome:CEL140:II:12908997:12910348:1 9/11 None
F35C5.11 ENSEMBL cdna:known chromosome:CEL140:II:12908997:12910176:1 gene:F35C5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12908993-12910173(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C5.11
Entrez Gene 185266 Entrez gene
SwissProt O45447 EMBL-EBI
WormBase CE35521 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03061 Hypothetical protein F35C5.11 [Caenorhabditis elegans] ref|NP_496748.2| F35C5.11 [Caenorhabditis elegans] 4.0E-83
blast CAE56235 Hypothetical protein CBG23870 [Caenorhabditis briggsae] 7.0E-61
blast CAE60624 Hypothetical protein CBG04267 [Caenorhabditis briggsae] 7.0E-61
blast CAB03061 Hypothetical protein F35C5.11 [Caenorhabditis elegans] ref|NP_496748.2| F35C5.11 [Caenorhabditis elegans] 9.0E-60
blast CAE56235 Hypothetical protein CBG23870 [Caenorhabditis briggsae] 5.0E-49
blast CAE60624 Hypothetical protein CBG04267 [Caenorhabditis briggsae] 5.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496748.2 2 4-21,134-156
F35C5.11 2 4-21,134-156
Sequence
Target Sequence 
>C. ELEGANS:184057_AT
taattctggctttcatcacttcatcggcatatgctatcaaatgtcatcaatgcggaggcg
ctgagaaaatcccgaaatttgcgaaaaacgctctggcgaagctgaatatttcggtggata
gtctttacggggactgcaaaaagacgtctggaagtgatatgtgctccaatggaacgtttt
gcttgaagcgtgcaaaagtctaccaaatcggttacagtggtgtcaacttgaaatggacta
cgtatacaaaaggatgtgcgactctccgcgaggacaatgaccaaatcccaacgaacacat
gttatgagctcgggcaaaagcgaatggattgctattgccagaaagacttttgcaactcga
ctacaaatcttggcggctcacttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCTGGCTTTCATCACTTCATC 313 635 38 Antisense
CATCACTTCATCGGCATATGCTATC 273 213 51 Antisense
AAATGTCATCAATGCGGAGGCGCTG 586 119 76 Antisense
GAGGCGCTGAGAAAATCCCGAAATT 150 407 92 Antisense
GTGCTCCAATGGAACGTTTTGCTTG 617 477 198 Antisense
GAAGCGTGCAAAAGTCTACCAAATC 398 343 222 Antisense
CAAAAGGATGTGCGACTCTCCGCGA 241 191 284 Antisense
GACAATGACCAAATCCCAACGAACA 281 365 310 Antisense
GAACACATGTTATGAGCTCGGGCAA 138 351 330 Antisense
GAAAGACTTTTGCAACTCGACTACA 561 359 378 Antisense
TACAAATCTTGGCGGCTCACTTATA 306 641 399 Antisense
Sequence Source Affymetrix Proprietary Database