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[184056_at]

Description F29B9.1 /REP_DB=WormBase Gene ID /WP=CE27144 /TR=Q9GYH9 /GB=AAF99920.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 51.7
(-1.1)
A 		84.7
(3)
M 		36.2
(-3)
A 		49.3
(-1.4)
A 		49
B 29.3
(-2.7)
A 		24.9
(-3)
A 		54.5
(-1.2)
A 		122.9
(3)
P 		98
C 12.3
(-3)
A 		45.7
(-1.1)
A 		42.9
(-1.2)
A 		116.4
(3)
P 		104
avr 31.1
(-3) 		51.8
(-1.1) 		44.5
(-1.8) 		96.2
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 76.5
(0.5)
M 		47.7
(-1.5)
A 		86
(1.2)
P 		62.5
(-0.5)
M 		27.1
(-3)
A 		111.9
(3)
P 		85
B 36.7
(-3)
A 		49.6
(-1.8)
A 		80.5
(1.1)
P 		38.7
(-2.8)
A 		90.8
(2.1)
P 		100.2
(3)
P 		64
C 77.2
(1.9)
A 		71.3
(1.3)
P 		31.3
(-3)
A 		55.6
(-0.4)
A 		87.3
(3)
P 		68.8
(1)
P 		56
avr 63.5
(-1.4) 		56.2
(-2.4) 		65.9
(-1) 		52.3
(-3) 		68.4
(-0.7) 		93.6
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 18.8
(3)
A 		18.4
(2.8)
M 		9.5
(-1.8)
A 		7.2
(-3)
A 		12
B 9.3
(-2)
A 		6.1
(-3)
A 		12.6
(-1.1)
A 		26.2
(3)
P 		20
C 4.1
(-3)
A 		13.1
(0.5)
A 		15
(1.2)
A 		19.6
(3)
P 		16
avr 10.7
(-3) 		12.5
(-1.5) 		12.4
(-1.5) 		17.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.1
(-1.1)
M 		17
(-0.2)
A 		18.7
(0.3)
P 		15.9
(-0.6)
M 		8.2
(-3)
A 		27.2
(3)
P 		19
B 12.8
(-2.4)
A 		16.5
(-1.6)
A 		19.6
(-0.9)
P 		10.3
(-3)
A 		36.9
(2.9)
P 		37.4
(3)
P 		27
C 28.6
(3)
A 		21.8
(1)
P 		8
(-3)
A 		11.2
(-2.1)
A 		28.3
(2.9)
P 		23
(1.4)
P 		21
avr 18.5
(-0.8) 		18.4
(-0.9) 		15.4
(-2) 		12.5
(-3) 		24.5
(1.3) 		29.2
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10698
Sequence Type Exemplar sequence
Representative Public ID F29B9.1 NCBI
Target Description F29B9.1 /REP_DB=WormBase Gene ID /WP=CE27144 /TR=Q9GYH9 /GB=AAF99920.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068211 NCBI Caenorhabditis elegans F29B9.1 (F29B9.1) mRNA, complete cds. 11/11 None
SNAP00000034770 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4665415:4667230:1 10/11 None
GENEFINDER00000034772 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4665415:4667230:1 11/11 None
F29B9.1 ENSEMBL cdna:known chromosome:CEL140:IV:4665242:4667271:1 gene:F29B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4665420-4666556(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29B9.1
Entrez Gene 177233 Entrez gene
SwissProt Q9GYH9 EMBL-EBI
WormBase CE27144 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256380_AT S locus-linked protein, putative at
DROSOPHILA_2:1637143_AT dm
DROSGENOME1:145683_AT dm
CHICKEN:GGA.13083.1.S1_S_AT similar to CG9643-PA gga
CHICKEN:GGA.14448.1.S1_AT similar to CG9643-PA gga
HG-U133_PLUS_2:215061_AT similar to CG9643-PA hs
HG-U133A_2:215061_AT similar to CG9643-PA hs
HG-U133A:215061_AT similar to CG9643-PA hs
HU35KSUBC:RC_N50948_AT similar to CG9643-PA hs
U133_X3P:HS.98613.0.S2_3P_AT similar to CG9643-PA hs
U133_X3P:HS.98613.0.S1_3P_AT similar to CG9643-PA hs
U133_X3P:HS.279629.0.S1_3P_AT similar to CG9643-PA hs
HG-U133_PLUS_2:226631_AT similar to CG9643-PA hs
HG-U133B:226631_AT similar to CG9643-PA hs
HG-U133_PLUS_2:226634_AT similar to CG9643-PA hs
HG-U133B:226634_AT similar to CG9643-PA hs
HG-U95C:48771_AT similar to CG9643-PA hs
HG-U95D:77517_AT similar to CG9643-PA hs
HG-U95E:83390_AT similar to CG9643-PA hs
HU35KSUBD:RC_AA428654_AT Similar to CG9643-PA hs
U133_X3P:HS2.382267.1.S1_3P_AT Similar to CG9643-PA hs
U133_X3P:HS2.253057.1.A1_3P_S_AT Similar to CG9643-PA hs
HG-U133_PLUS_2:1556694_A_AT Similar to CG9643-PA hs
HG-U133_PLUS_2:1567380_AT Similar to CG9643-PA hs
HG-U133_PLUS_2:1567379_AT Similar to CG9643-PA hs
MG-U74BV2:108562_AT RIKEN cDNA 2010208K18 gene mm
MOE430B:1428582_AT RIKEN cDNA 2010208K18 gene mm
MOUSE430_2:1428582_AT RIKEN cDNA 2010208K18 gene mm
MG-U74CV2:134517_AT RIKEN cDNA 2010208K18 gene, mRNA (cDNA clone MGC:106027 IMAGE:30445095) mm
MU19KSUBC:TC35089_AT RIKEN cDNA 2010208K18 gene, mRNA (cDNA clone MGC:106027 IMAGE:30445095) mm
RG-U34B:RC_AI070033_AT similar to CG9643-PA (predicted) rn
RAE230B:1382290_AT similar to CG9643-PA (predicted) rn
RAT230_2:1382290_AT similar to CG9643-PA (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_500612 F29B9.1 [Caenorhabditis elegans] gb|AAF99920.2| Hypothetical protein F29B9.1 [Caenorhabditis elegans] 1.0E-121
blast NP_500612 F29B9.1 [Caenorhabditis elegans] gb|AAF99920.2| Hypothetical protein F29B9.1 [Caenorhabditis elegans] 1.0E-118
blast T29936 hypothetical protein F29B9.1 - Caenorhabditis elegans 8.0E-92
blast T29936 hypothetical protein F29B9.1 - Caenorhabditis elegans 4.0E-88
blast CAE58565 Hypothetical protein CBG01728 [Caenorhabditis briggsae] 7.0E-86
Sequence
Target Sequence 
>C. ELEGANS:184056_AT
attgcttcttcacaacttggaaccaaggatttctgggatcaacgatacgagttggaactt
aaaaatttcaagcaacacggagatgagggagaggtgtggttcggaacatcgtctgaaaca
cgaatcgtaaaatatttaatcgattcgaaaaccggcaaagatgcaaagattcttgatttg
ggatgtggaaatggatcggttttgaggaaattgagatcgaaaggattccagagtctgaaa
ggtgttgattattgtcaaaaagctgttgatctttctgcagccgcttcgaaagctgagcga
gaagaggaagaagacgaagaattagtagatattgaatttgagcaattggacataaccaca
ccgccagccgactttttctcctcgaaattcgatgtaattctcgataaaggcacatgggac
gcgatgagcctatccgatgaacgagaagctcgtctgaaagcctacttgggttttcttgat
aatggtctgagcgctggcggtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTTCTTCACAACTTGGAACCA 545 5 43 Antisense
GGAACCAAGGATTTCTGGGATCAAC 204 531 61 Antisense
GAGGTGTGGTTCGGAACATCGTCTG 354 401 133 Antisense
AGCTGTTGATCTTTCTGCAGCCGCT 194 81 303 Antisense
GCAGCCGCTTCGAAAGCTGAGCGAG 565 313 319 Antisense
GCAATTGGACATAACCACACCGCCA 580 323 384 Antisense
GGCACATGGGACGCGATGAGCCTAT 316 535 451 Antisense
GCGATGAGCCTATCCGATGAACGAG 158 291 463 Antisense
GAAGCTCGTCTGAAAGCCTACTTGG 231 343 487 Antisense
AGCCTACTTGGGTTTTCTTGATAAT 680 79 501 Antisense
TAATGGTCTGAGCGCTGGCGGTCGA 376 635 522 Antisense
Sequence Source Affymetrix Proprietary Database