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[184055_at]

Description C12D5.5 /REP_DB=WormBase Gene ID /WP=CE06807 /TR=Q17924 /GB=AAA98567.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_total > 63      4grp_total > 33      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 87.7
(-3)
P 		244.1
(1.6)
P 		218.5
(0.8)
P 		293.3
(3)
P 		206
B 101.8
(-3)
P 		195.1
(1.6)
P 		208.1
(2.3)
P 		222.7
(3)
P 		121
C 89.6
(-3)
P 		213.7
(1.1)
P 		194
(0.4)
P 		271.4
(3)
P 		182
avr 93
(-3) 		217.6
(1.4) 		206.9
(1) 		262.5
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 155.3
(-3)
A 		175.7
(-1.3)
P 		224.1
(2.7)
P 		211.1
(1.6)
P 		227.5
(3)
P 		216.3
(2.1)
P 		72
B 101
(-3)
P 		163.8
(-0.9)
P 		283.3
(3)
P 		271.7
(2.6)
P 		157.4
(-1.1)
P 		127.3
(-2.1)
P 		182
C 117.7
(-3)
P 		200.1
(-0.7)
P 		331.2
(3)
P 		295.2
(2)
P 		228.3
(0.1)
P 		161.7
(-1.8)
P 		214
avr 124.7
(-3) 		179.9
(-0.9) 		279.5
(3) 		259.3
(2.2) 		204.4
(0.1) 		168.4
(-1.3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 31.9
(-3)
P 		53
(2)
P 		57.1
(3)
P 		42.9
(-0.4)
P 		25
B 32.5
(-3)
P 		48.2
(3)
P 		48.2
(3)
P 		47.4
(2.7)
P 		16
C 29.7
(-3)
P 		61.4
(2)
P 		67.6
(3)
P 		45.8
(-0.5)
P 		38
avr 31.4
(-3) 		54.2
(2.2) 		57.6
(3) 		45.4
(0.2) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 28.6
(-3)
A 		62.5
(2.1)
P 		48.8
(0)
P 		53.5
(0.7)
P 		68.6
(3)
P 		52.7
(0.6)
P 		40
B 35.1
(-3)
P 		54.5
(0.2)
P 		68.8
(2.5)
P 		72
(3)
P 		64
(1.7)
P 		47.5
(-1)
P 		37
C 43.6
(-3)
P 		61.1
(-0.4)
P 		84.3
(3)
P 		59.4
(-0.7)
P 		73.9
(1.5)
P 		54.1
(-1.5)
P 		41
avr 35.8
(-3) 		59.4
(1.3) 		67.3
(2.7) 		61.6
(1.7) 		68.8
(3) 		51.4
(-0.2) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12446
Sequence Type Exemplar sequence
Representative Public ID C12D5.5 NCBI
Target Description C12D5.5 /REP_DB=WormBase Gene ID /WP=CE06807 /TR=Q17924 /GB=AAA98567.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072583 NCBI Caenorhabditis elegans C12D5.5 (C12D5.5) mRNA, complete cds. 11/11 None
SNAP00000021438 ENSEMBL cdna:SNAP chromosome:CEL140:V:7670885:7671322:1 11/11 None
GENEFINDER00000021453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7670885:7671488:1 10/11 None
C12D5.5 ENSEMBL cdna:known chromosome:CEL140:V:7670832:7671578:1 gene:C12D5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7670885-7671323(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D5.5
Entrez Gene 182536 Entrez gene
SwissProt Q17924 EMBL-EBI
WormBase CE06807 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98567 Hypothetical protein C12D5.5 [Caenorhabditis elegans] ref|NP_504984.1| C12D5.5 [Caenorhabditis elegans] 9.0E-64
blast AAA98567 Hypothetical protein C12D5.5 [Caenorhabditis elegans] ref|NP_504984.1| C12D5.5 [Caenorhabditis elegans] 3.0E-54
blast AAA98568 Hypothetical protein C12D5.4 [Caenorhabditis elegans] ref|NP_504985.1| C12D5.4 [Caenorhabditis elegans] 1.0E-19
blast AAC64978 Hypothetical protein B0294.1 [Caenorhabditis elegans] ref|NP_508348.1| B0294.1 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:184055_AT
ctctcatcgccgctacaatggcaactgccaattcactccattgctacaccatgaatgaat
accaaagtcacccaataacaactacaaacaacatcgcgtgtctttccgtcttcgaagtcg
aaggccaatcttcctcattcggagccatcgtcgactcccaattcaatgctcatcgcaaga
ttgagttggccaccgccgacggaagttgcaaaaagatggagaagatcctctacgacaaga
ctcaacctgatatattctacgaggccttcttgtgctattgcacggaagacaagtgcaaca
agccgatcacgtacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCATCGCCGCTACAATGGCAAC 385 229 38 Antisense
AATGGCAACTGCCAATTCACTCCAT 229 163 54 Antisense
TTCACTCCATTGCTACACCATGAAT 360 683 69 Antisense
CAAACAACATCGCGTGTCTTTCCGT 464 189 122 Antisense
AAGTCGAAGGCCAATCTTCCTCATT 284 151 152 Antisense
CGACTCCCAATTCAATGCTCATCGC 277 251 189 Antisense
ATCGCAAGATTGAGTTGGCCACCGC 149 37 209 Antisense
GCCACCGCCGACGGAAGTTGCAAAA 276 279 226 Antisense
GATCCTCTACGACAAGACTCAACCT 178 401 261 Antisense
ATTCTACGAGGCCTTCTTGTGCTAT 664 9 291 Antisense
AGTGCAACAAGCCGATCACGTACGC 663 57 329 Antisense
Sequence Source Affymetrix Proprietary Database