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[184054_at]

Description ZK355.4 /REP_DB=WormBase Gene ID /WP=CE23457 /TR=Q9N4N9 /GB=AAF39996.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 6.8
(-1.9)
A 		5.1
(-2.4)
A 		3.1
(-3)
A 		24
(3)
A 		21
B 43.1
(3)
A 		36.5
(2)
A 		26.7
(0.6)
A 		2.7
(-3)
A 		40
C 3.2
(-3)
A 		47.8
(3)
A 		15.4
(-1.4)
A 		10.2
(-2.1)
A 		45
avr 17.7
(-1.1) 		29.8
(3) 		15.1
(-2) 		12.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.2
(-1.5)
A 		8.3
(-1.8)
A 		4.3
(-3)
A 		6.4
(-2.3)
A 		6.3
(-2.4)
A 		23.5
(3)
A 		19
B 21.5
(3)
A 		19
(2.2)
A 		2.1
(-2.8)
A 		13.7
(0.6)
A 		1.6
(-3)
A 		1.8
(-2.9)
A 		20
C 9.8
(1.7)
A 		11
(3)
A 		7.9
(-0.3)
A 		6.3
(-2)
A 		5.7
(-2.7)
A 		5.4
(-3)
A 		6
avr 13.5
(3) 		12.8
(2.5) 		4.8
(-2.8) 		8.8
(-0.1) 		4.5
(-3) 		10.2
(0.8) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.5
(0.8)
A 		1.1
(-2.3)
A 		0.8
(-3)
A 		3.5
(3)
A 		3
B 13.8
(3)
A 		9
(0.8)
A 		6.2
(-0.5)
A 		0.6
(-3)
A 		13
C 1
(-3)
A 		13.7
(3)
A 		5.4
(-0.9)
A 		1.7
(-2.7)
A 		13
avr 5.8
(0.9) 		7.9
(3) 		4.1
(-0.8) 		1.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.7
(-2)
A 		2.9
(-0.5)
A 		0.9
(-3)
A 		1.6
(-2.1)
A 		1.9
(-1.8)
A 		5.7
(3)
A 		5
B 7.5
(3)
A 		6.3
(2)
A 		0.5
(-3)
A 		3.6
(-0.3)
A 		0.7
(-2.8)
A 		0.7
(-2.8)
A 		7
C 3.6
(3)
A 		3.4
(2.5)
A 		2
(-1.2)
A 		1.3
(-3)
A 		1.9
(-1.4)
A 		1.8
(-1.7)
A 		2
avr 4.3
(3) 		4.2
(2.8) 		1.1
(-3) 		2.2
(-0.9) 		1.5
(-2.3) 		2.7
(0) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5098
Sequence Type Exemplar sequence
Representative Public ID ZK355.4 NCBI
Target Description ZK355.4 /REP_DB=WormBase Gene ID /WP=CE23457 /TR=Q9N4N9 /GB=AAF39996.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062001(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062001 NCBI Caenorhabditis elegans ZK355.4 (ZK355.4) mRNA, complete cds. 11/11 None
SNAP00000021473 ENSEMBL cdna:SNAP chromosome:CEL140:II:2928217:2930595:-1 11/11 None
GENEFINDER00000021480 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2927056:2930595:-1 11/11 None
ZK355.4 ENSEMBL cdna:known chromosome:CEL140:II:2928217:2930595:-1 gene:ZK355.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2928215-2930594(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK355.4
Entrez Gene 191299 Entrez gene
SwissProt Q9N4N9 EMBL-EBI
WormBase CE23457 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39996 Hypothetical protein ZK355.4 [Caenorhabditis elegans] ref|NP_494402.1| ZK355.4 [Caenorhabditis elegans] 0.0
blast AAM34815 Hypothetical protein T11F1.7 [Caenorhabditis elegans] ref|NP_494406.1| T11F1.7 [Caenorhabditis elegans] 1.0E-107
blast AAF39999 Hypothetical protein ZK355.5 [Caenorhabditis elegans] ref|NP_494404.1| ZK355.5 [Caenorhabditis elegans] 1.0E-104
blast AAM34815 Hypothetical protein T11F1.7 [Caenorhabditis elegans] ref|NP_494406.1| T11F1.7 [Caenorhabditis elegans] 1.0E-100
blast AAC68705 Hypothetical protein T11F1.8 [Caenorhabditis elegans] ref|NP_494409.1| T11F1.8 [Caenorhabditis elegans] 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.7E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.9E-12
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.7E-18
Sequence
Target Sequence 
>C. ELEGANS:184054_AT
gcagctcttcaacgagatagaccccggcgcaacgatcctgaacctcgagaacctgcatcc
cgatttttgcctaaccttcgacaatctgtggcaatttacgtgggatcgcgtggaactcat
cagccttcccgccaactactgcacaaaagatgtgggaaacatccgagattgggcacgagt
ctgtatattctacacgttggaaaaactgcccaccaattgttatggaatcattggcgatgt
ggaggtcgacgtcaactcgggaactcatttatacaagctttttggtgtggttttcatttt
tggatcgctgaaaattcagtacatgaaagcggaaggtttggactttttgtacaagttagc
ttatgtgatcgcaccggatgcggctcggccagcgattttgatccgttcgaataaatatct
gaagaacgcaattttggcaagtttagagcacgccatctccacttccagcacaccagttgc
cctttacgataacccattgttattccaaaacaactatgaatgtctgatgttccgtataac
ctacctgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCTCTTCAACGAGATAGACCCC 7 313 885 Antisense
GCAACGATCCTGAACCTCGAGAACC 682 319 913 Antisense
TTTGCCTAACCTTCGACAATCTGTG 88 669 950 Antisense
TCCCGCCAACTACTGCACAAAAGAT 413 597 1011 Antisense
GATTGGGCACGAGTCTGTATATTCT 389 435 1051 Antisense
GTCGACGTCAACTCGGGAACTCATT 444 471 1129 Antisense
TATGTGATCGCACCGGATGCGGCTC 391 655 1246 Antisense
CGGCCAGCGATTTTGATCCGTTCGA 449 241 1270 Antisense
GGCAAGTTTAGAGCACGCCATCTCC 6 535 1320 Antisense
TGCCCTTTACGATAACCCATTGTTA 156 301 1362 Antisense
GATGTTCCGTATAACCTACCTGACA 562 409 1410 Antisense
Sequence Source Affymetrix Proprietary Database