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[184053_at]

Description C01F1.5 /REP_DB=WormBase Gene ID /WP=CE06746 /TR=Q17554 /GB=AAB00713.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 63.9
(-3)
A 		236.8
(3)
P 		194.1
(1.5)
P 		104.8
(-1.6)
A 		173
B 62.7
(-3)
A 		232.4
(3)
P 		212.6
(2.3)
P 		101.6
(-1.6)
A 		170
C 35
(-3)
A 		220.7
(3)
P 		180.9
(1.7)
P 		87.1
(-1.3)
A 		186
avr 53.9
(-3) 		230
(3) 		195.9
(1.8) 		97.8
(-1.5) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 83.1
(-0.8)
M 		89.7
(-0.3)
A 		125.4
(2.1)
P 		138.7
(3)
P 		102.7
(0.6)
P 		50.3
(-3)
A 		88
B 83.6
(-1.3)
P 		112.5
(1.2)
P 		85.6
(-1.1)
P 		119.1
(1.7)
P 		134
(3)
P 		63.6
(-3)
P 		70
C 69
(-1.9)
P 		123.6
(2.4)
P 		101.8
(0.7)
P 		122.7
(2.3)
P 		131.5
(3)
P 		55
(-3)
A 		77
avr 78.6
(-1.1) 		108.6
(1.5) 		104.3
(1.1) 		126.8
(3) 		122.7
(2.7) 		56.3
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 23.3
(-1.7)
A 		51.4
(3)
P 		50.7
(2.9)
P 		15.3
(-3)
A 		36
B 20
(-3)
A 		57.4
(3)
P 		49.3
(1.7)
P 		21.7
(-2.7)
A 		37
C 11.6
(-3)
A 		63.4
(3)
P 		63.1
(3)
P 		14.7
(-2.6)
A 		52
avr 18.3
(-2.8) 		57.4
(3) 		54.4
(2.6) 		17.2
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 15.3
(-2.2)
M 		31.9
(2.1)
A 		27.3
(0.9)
P 		35.2
(3)
P 		31
(1.9)
P 		12.2
(-3)
A 		23
B 29.1
(-1.5)
P 		37.4
(-0)
P 		20.8
(-3)
P 		31.5
(-1.1)
P 		54.4
(3)
P 		23.7
(-2.5)
P 		34
C 25.6
(-1.2)
P 		37.7
(1.8)
P 		25.9
(-1.1)
P 		24.7
(-1.4)
P 		42.5
(3)
P 		18.4
(-3)
A 		24
avr 23.3
(-1.7) 		35.7
(1.3) 		24.7
(-1.4) 		30.5
(0) 		42.6
(3) 		18.1
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4074
Sequence Type Exemplar sequence
Representative Public ID C01F1.5 NCBI
Target Description C01F1.5 /REP_DB=WormBase Gene ID /WP=CE06746 /TR=Q17554 /GB=AAB00713.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062351 NCBI Caenorhabditis elegans C01F1.5 (C01F1.5) mRNA, complete cds. 11/11 None
SNAP00000028113 ENSEMBL cdna:SNAP chromosome:CEL140:II:4279782:4281821:-1 11/11 None
GENEFINDER00000028119 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4279500:4281821:-1 11/11 None
C01F1.5 ENSEMBL cdna:known chromosome:CEL140:II:4279782:4281821:-1 gene:C01F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4279780-4281820(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01F1.5
Entrez Gene 182069 Entrez gene
SwissProt Q17554 EMBL-EBI
WormBase CE06746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00713 Hypothetical protein C01F1.5 [Caenorhabditis elegans] ref|NP_494752.1| C01F1.5 [Caenorhabditis elegans] 1.0E-166
blast CAE60118 Hypothetical protein CBG03660 [Caenorhabditis briggsae] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:184053_AT
aaattccccacatgttttgattcgaaaatcagggaaatttgctgcatattcggatgcagt
tgttgagggattagtggatagaacgattctttatgttgcacaatcctcatttgttactag
taattttaataattcgaggggtttggttatggatcagttggtcagatttatgggattgca
gagggagttgtatcgacctgatgcggtgtcttatgttcaggctatcggaggcggaattcc
aaacctcggaactccggactacaacccaatccaactaacctggccattcgacccggagag
cattacagtacccctttgggctcgtgaaaagttccggctcactccctactgcccagcaag
aaacgacgcagatatcggagccggtcaacgtgtcgggctgcttaccaaatgggatactgt
aaagctgaatagtatgtattgtcccgagaagatcgtagacgccgatccatcacgtggacc
atgtgttgttccgagagctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCCCCACATGTTTTGATTCGA 497 113 330 Antisense
GTTGTATCGACCTGATGCGGTGTCT 176 437 516 Antisense
TGCGGTGTCTTATGTTCAGGCTATC 560 581 531 Antisense
CCAATCCAACTAACCTGGCCATTCG 92 277 595 Antisense
CCATTCGACCCGGAGAGCATTACAG 506 269 613 Antisense
AGCATTACAGTACCCCTTTGGGCTC 38 75 628 Antisense
CTCCCTACTGCCCAGCAAGAAACGA 108 235 671 Antisense
TATCGGAGCCGGTCAACGTGTCGGG 13 657 702 Antisense
TGTCGGGCTGCTTACCAAATGGGAT 26 555 720 Antisense
GATCGTAGACGCCGATCCATCACGT 686 417 780 Antisense
GACCATGTGTTGTTCCGAGAGCTAA 615 381 806 Antisense
Sequence Source Affymetrix Proprietary Database