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[184051_at]

Description C26F1.1 /REP_DB=WormBase Gene ID /WP=CE06875 /TR=Q18233 /GB=AAB37073.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 50      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1027
1 2 3 4 range
A 48.8
(-3)
A 		1037.7
(3)
A 		666.4
(0.7)
P 		84.9
(-2.8)
A 		989
B 69.9
(-2.5)
A 		771.3
(3)
P 		542.2
(1.2)
P 		11
(-3)
A 		760
C 101.1
(-2.7)
A 		898.9
(3)
P 		466.9
(-0.1)
P 		61.9
(-3)
A 		837
avr 73.3
(-2.9) 		902.6
(3) 		558.5
(0.6) 		52.6
(-3) 		850

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 480
1 2 3 4 5 6 range
A 334.4
(-3)
A 		403.5
(-1.2)
A 		373
(-2)
P 		564.4
(3)
P 		546.5
(2.5)
P 		343.7
(-2.8)
M 		230
B 207
(-3)
A 		412.8
(0.8)
P 		428
(1.1)
P 		363.2
(-0.1)
P 		528.9
(3)
P 		208
(-3)
P 		322
C 232.1
(-3)
M 		405.1
(-0.7)
P 		487.4
(0.4)
A 		391.6
(-0.9)
P 		686.9
(3)
P 		236.6
(-2.9)
A 		455
avr 257.8
(-3) 		407.1
(-0.3) 		429.5
(0.1) 		439.7
(0.3) 		587.4
(3) 		262.8
(-2.9) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 17.8
(-2.8)
A 		225.2
(3)
A 		174.2
(1.6)
P 		12.4
(-3)
A 		213
B 22.3
(-2.4)
A 		190.5
(3)
P 		125.6
(0.9)
P 		2.3
(-3)
A 		188
C 33.5
(-2.4)
A 		258.4
(3)
P 		162.7
(0.7)
P 		10.4
(-3)
A 		248
avr 24.5
(-2.6) 		224.7
(3) 		154.2
(1) 		8.4
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 61.6
(-3)
A 		143.5
(1.8)
A 		81.2
(-1.9)
P 		143.1
(1.7)
P 		164.9
(3)
P 		83.7
(-1.7)
M 		103
B 72
(-3)
A 		137.4
(-0.3)
P 		103.9
(-1.7)
P 		96.2
(-2)
P 		214.9
(3)
P 		77.6
(-2.8)
P 		143
C 86
(-2.7)
M 		123.6
(-1.1)
P 		124.1
(-1.1)
A 		78.7
(-3)
P 		222.3
(3)
P 		79.2
(-3)
A 		144
avr 73.2
(-3) 		134.8
(-0.1) 		103.1
(-1.6) 		106
(-1.5) 		200.7
(3) 		80.2
(-2.7) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11581
Sequence Type Exemplar sequence
Representative Public ID C26F1.1 NCBI
Target Description C26F1.1 /REP_DB=WormBase Gene ID /WP=CE06875 /TR=Q18233 /GB=AAB37073.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028509, NM_001028510
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018582 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7788011:7790200:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028510 5/11 Cross Hyb Matching Probes None
NM_001028509 5/11 Cross Hyb Matching Probes None
SNAP00000018574 4/11 Cross Hyb Matching Probes None
SNAP00000018575 5/11 Cross Hyb Matching Probes None
C26F1.1b 5/11 Cross Hyb Matching Probes None
C26F1.1a 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7788011-7790201(+) 96.64 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15645 hypothetical protein C26F1.1 - Caenorhabditis elegans 6.0E-56
blast AAN84860 Hypothetical protein C26F1.1b [Caenorhabditis elegans] ref|NP_001023681.1| C26F1.1b [Caenorhabditis elegans] 4.0E-30
blast CAE73191 Hypothetical protein CBG20590 [Caenorhabditis briggsae] 8.0E-18
Sequence
Target Sequence 
>C. ELEGANS:184051_AT
accaccaacctatgcaatgccaaggcaagctcaacgagcgccaatgattcaatcccaacc
ttactatcctccaccacctccaccacctccaccagcacctcaatacccatccagcagcag
ttaccaacaccaaggatcctattattcatcgggtgcatcagcgcctatggacaacgtggc
acatgctccaggatcttctgtctcttcagtttctaacacaattccatcaatcattccacc
accacaagacaagtacaatgacggagatgtcataatttcagtagaaagatatcagcccaa
ccactttagaaatatcattggataccaacaacaaccacagcaacaattcatgggacaagt
tgagcaaggagtcgagattactcctgaccaaatcaactccggataccaaccacaacagca
aatgggcttccaatcccagcagcaacaattctcatcaatccctaactctggatcatccaa
ttacggagctgattcctctttctccggatctcaacctgccggccttgtacaatcagtcgc
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACCAACCTATGCAATGCCAAGG 637 85 207 Antisense
ACGAGCGCCAATGATTCAATCCCAA 509 93 240 Antisense
CCAGCAGCAGTTACCAACACCAAGG 461 273 317 Antisense
ATTATTCATCGGGTGCATCAGCGCC 233 13 347 Antisense
TGGACAACGTGGCACATGCTCCAGG 710 547 374 Antisense
GATATCAGCCCAACCACTTTAGAAA 139 427 494 Antisense
ATTACTCCTGACCAAATCAACTCCG 356 13 583 Antisense
GCAAATGGGCTTCCAATCCCAGCAG 706 317 624 Antisense
CAACAATTCTCATCAATCCCTAACT 363 189 649 Antisense
ATTACGGAGCTGATTCCTCTTTCTC 434 13 686 Antisense
TGCCGGCCTTGTACAATCAGTCGCC 93 585 723 Antisense
Sequence Source Affymetrix Proprietary Database