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[184049_at]

Description R02D3.2 /REP_DB=WormBase Gene ID /WP=CE18096 /TR=O44502 /GB=AAB94143.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 92      6grp_total > 66      4grp_total > 41      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 245.9
(-0.2)
P 		277.6
(1.2)
P 		316.2
(3)
P 		184.1
(-3)
P 		132
B 226.7
(-3)
P 		245.2
(-1.3)
P 		293.9
(3)
P 		270.2
(0.9)
P 		67
C 188.5
(-3)
P 		346.1
(3)
P 		262.4
(-0.2)
P 		326.7
(2.3)
P 		158
avr 220.4
(-3) 		289.6
(2.9) 		290.8
(3) 		260.3
(0.4) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 301.4
(-1)
P 		258.6
(-2.1)
P 		254.1
(-2.3)
P 		275.6
(-1.7)
P 		226.8
(-3)
P 		448.9
(3)
P 		222
B 275.4
(-2)
P 		276.1
(-2)
P 		368.2
(0.5)
P 		241.1
(-2.9)
P 		238.2
(-3)
P 		460.9
(3)
P 		223
C 197.2
(-3)
P 		290.3
(-0.8)
P 		235.1
(-2.1)
P 		234.9
(-2.1)
P 		195.7
(-3)
P 		454.5
(3)
P 		259
avr 258
(-2) 		275
(-1.6) 		285.8
(-1.3) 		250.5
(-2.2) 		220.2
(-3) 		454.8
(3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 89.5
(3)
P 		60.3
(0.2)
P 		82.7
(2.3)
P 		27
(-3)
P 		63
B 72.3
(3)
P 		60.6
(-1.8)
P 		68.1
(1.3)
P 		57.6
(-3)
P 		15
C 62.4
(-2)
P 		99.5
(3)
P 		91.4
(1.9)
P 		55.1
(-3)
P 		44
avr 74.7
(1.9) 		73.5
(1.7) 		80.7
(3) 		46.6
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 55.6
(-3)
P 		92
(1.1)
P 		55.3
(-3)
P 		69.9
(-1.4)
P 		68.4
(-1.5)
P 		109.3
(3)
P 		54
B 95.8
(-1.2)
P 		91.9
(-1.4)
P 		89.4
(-1.6)
P 		63.9
(-3)
P 		96.8
(-1.2)
P 		171.9
(3)
P 		108
C 73.1
(-1.5)
P 		88.6
(-0.6)
P 		59.8
(-2.3)
P 		47.2
(-3)
P 		63.3
(-2.1)
P 		152.2
(3)
P 		105
avr 74.8
(-2) 		90.8
(-0.8) 		68.2
(-2.4) 		60.3
(-3) 		76.2
(-1.9) 		144.5
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10695
Sequence Type Exemplar sequence
Representative Public ID R02D3.2 NCBI
Target Description R02D3.2 /REP_DB=WormBase Gene ID /WP=CE18096 /TR=O44502 /GB=AAB94143.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067482 NCBI Caenorhabditis elegans R02D3.2 (R02D3.2) mRNA, complete cds. 11/11 None
SNAP00000011016 ENSEMBL cdna:SNAP chromosome:CEL140:IV:240699:243904:1 11/11 None
GENEFINDER00000011029 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:240589:243904:1 11/11 None
R02D3.2 ENSEMBL cdna:known chromosome:CEL140:IV:240552:244129:1 gene:R02D3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:240588-243904(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D3.2
Entrez Gene 176841 Entrez gene
SwissProt O44502 EMBL-EBI
WormBase CE18096 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250297_AT conserved oligomeric Golgi complex component-related / COG complex component-related at
CANINE_2:CFAAFFX.31054.1.S1_AT similar to component of oligomeric golgi complex 8 cfa
DROSOPHILA_2:1631891_AT dm
DROSGENOME1:141690_AT dm
HG-U133_PLUS_2:219575_S_AT component of oligomeric golgi complex 8 hs
HG-U133A:219575_S_AT component of oligomeric golgi complex 8 hs
HG-FOCUS:219575_S_AT component of oligomeric golgi complex 8 hs
HG-U133A_2:219575_S_AT component of oligomeric golgi complex 8 hs
HU35KSUBC:RC_AA112466_AT component of oligomeric golgi complex 8 hs
U133_X3P:G11641242_3P_S_AT component of oligomeric golgi complex 8 hs
HG-U95B:52271_S_AT component of oligomeric golgi complex 8 hs
HG-U95E:76522_AT component of oligomeric golgi complex 8 hs
HG-U95E:84778_AT component of oligomeric golgi complex 8 hs
HG-U133_PLUS_2:238863_X_AT Peptide deformylase-like protein hs
HG-U133B:238863_X_AT Peptide deformylase-like protein hs
HU35KSUBA:R86178_AT Peptide deformylase-like protein hs
U133_X3P:238863_3P_X_AT Peptide deformylase-like protein hs
U133_X3P:HS.72322.0.A1_3P_AT Peptide deformylase-like protein hs
U133_X3P:HS.72322.0.A1_3P_X_AT Peptide deformylase-like protein hs
MG-U74AV2:98097_R_AT component of oligomeric golgi complex 8 mm
MG-U74AV2:98096_F_AT component of oligomeric golgi complex 8 mm
MG-U74BV2:108088_AT component of oligomeric golgi complex 8 mm
MG-U74BV2:165063_R_AT component of oligomeric golgi complex 8 mm
MOE430A:1423617_AT component of oligomeric golgi complex 8 mm
MOUSE430A_2:1423617_AT component of oligomeric golgi complex 8 mm
MOUSE430_2:1423617_AT component of oligomeric golgi complex 8 mm
MOE430A:1451052_AT component of oligomeric golgi complex 8 mm
MOUSE430A_2:1451052_AT component of oligomeric golgi complex 8 mm
MOUSE430_2:1451052_AT component of oligomeric golgi complex 8 mm
MOE430A:1426821_AT component of oligomeric golgi complex 8 mm
MOUSE430A_2:1426821_AT component of oligomeric golgi complex 8 mm
MOUSE430_2:1426821_AT component of oligomeric golgi complex 8 mm
MOE430B:1447860_X_AT component of oligomeric golgi complex 8 mm
MOUSE430_2:1447860_X_AT component of oligomeric golgi complex 8 mm
MOE430B:1420265_X_AT component of oligomeric golgi complex 8 mm
MOUSE430_2:1420265_X_AT component of oligomeric golgi complex 8 mm
MU19KSUBB:TC26621_AT Component of oligomeric golgi complex 8 (Cog8), mRNA mm
MU19KSUBB:TC31540_AT Component of oligomeric golgi complex 8 (Cog8), mRNA mm
MU19KSUBC:TC36580_AT Component of oligomeric golgi complex 8 (Cog8), mRNA mm
RG-U34C:RC_AI231215_AT component of oligomeric golgi complex 8 (predicted) rn
RAE230B:1390794_AT component of oligomeric golgi complex 8 (predicted) rn
RAT230_2:1390794_AT component of oligomeric golgi complex 8 (predicted) rn
RAE230A:1374045_AT Component of oligomeric golgi complex 8 (predicted) rn
RAT230_2:1374045_AT Component of oligomeric golgi complex 8 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB94143 Hypothetical protein R02D3.2 [Caenorhabditis elegans] ref|NP_499883.1| R02D3.2 [Caenorhabditis elegans] sp|O44502|COG8_CAEEL Putative conserved oligomeric Golgi complex component 0.0
blast CAE58514 Hypothetical protein CBG01665 [Caenorhabditis briggsae] 0.0
blast XP_214673 PREDICTED: similar to Conserved oligomeric Golgi complex component 8 [Rattus norvegicus] 9.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR007255 EMBL-EBI Dor1-like protein 1.0E-126
Pfam IPR007255 EMBL-EBI Dor1-like protein 1.0E-126
Pfam IPR007255 EMBL-EBI Dor1-like protein 1.2E-49
Pfam IPR007255 EMBL-EBI Dor1-like protein 2.3E-97
Sequence
Target Sequence 
>C. ELEGANS:184049_AT
ctgtagaggatggtcctgggctcgcggagccgcaagaagaagcttcagagtctgtgaagg
agcaggaaacgacttctgagctagagaagaagcatgggacggattttgagacagcagaga
cgcaggaaatggtatctgagcctgtgaaagagcatgagacgacttctgagctaacaaaag
agcaagaacccgcatttgagccagagaaattgcatgagacgcctcctgagcccatggaac
ctcaaaatttcggagaatctgaagcgaaggccgctcacaatcctgaagctcatttagagc
tcggagaaacttctgaaaatcaagaaatacgggagcaagagcacaaggaagtggttatca
cctcgactgagcctgaatttcatgaaattgacttaaattccgcggttttaattccgaaaa
ttgccgtcgagcctcaactcgatccgattagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTAGAGGATGGTCCTGGGCTCGC 363 239 1652 Antisense
GCATGAGACGACTTCTGAGCTAACA 531 309 1803 Antisense
AGAGCAAGAACCCGCATTTGAGCCA 550 69 1830 Antisense
AGAAATTGCATGAGACGCCTCCTGA 227 73 1856 Antisense
CTCCTGAGCCCATGGAACCTCAAAA 192 231 1874 Antisense
GAATCTGAAGCGAAGGCCGCTCACA 20 329 1906 Antisense
CGCTCACAATCCTGAAGCTCATTTA 558 255 1923 Antisense
GAAGTGGTTATCACCTCGACTGAGC 489 335 1999 Antisense
ACCTCGACTGAGCCTGAATTTCATG 658 87 2011 Antisense
TTCCGAAAATTGCCGTCGAGCCTCA 420 697 2063 Antisense
GAGCCTCAACTCGATCCGATTAGTG 486 385 2080 Antisense
Sequence Source Affymetrix Proprietary Database