[Home] | [Total List]

[184048_s_at]

Description ZK1225.5 /REP_DB=WormBase Gene ID /WP=CE19344 /TR=Q9XXL1 /GB=CAA18376.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 09      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 11.8
(-3)
A 		24.9
(-0.7)
P 		12
(-3)
A 		46.2
(3)
A 		34
B 11.2
(-2.2)
A 		9.5
(-3)
A 		22.4
(3)
M 		16.7
(0.3)
A 		13
C 10.5
(-3)
A 		12.9
(-2.8)
A 		21.2
(-2)
A 		77.1
(3)
A 		67
avr 11.2
(-3) 		15.8
(-2.2) 		18.5
(-1.8) 		46.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 42.5
(3)
A 		20.9
(-1.8)
A 		25.3
(-0.8)
P 		15.4
(-3)
A 		42.3
(3)
P 		35.5
(1.5)
A 		27
B 5.8
(-2.3)
A 		24
(0.8)
A 		1.4
(-3)
A 		27.5
(1.3)
P 		37.5
(3)
P 		35.9
(2.7)
P 		36
C 2.5
(-3)
A 		39
(2)
P 		46
(3)
A 		41.4
(2.4)
A 		31.3
(1)
P 		40.9
(2.3)
P 		44
avr 16.9
(-3) 		28
(0.2) 		24.2
(-0.9) 		28.1
(0.3) 		37
(2.9) 		37.4
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.3
(-1.1)
A 		5.4
(0.7)
P 		3.1
(-3)
A 		6.8
(3)
A 		4
B 3.6
(-0.3)
A 		2.3
(-3)
A 		5.2
(3)
M 		3.6
(-0.3)
A 		3
C 3.5
(-3)
A 		3.7
(-2.9)
A 		7.4
(-0.5)
A 		13
(3)
A 		10
avr 3.8
(-3) 		3.8
(-3) 		5.2
(-0.9) 		7.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.8
(-0.4)
A 		7.4
(-0.6)
A 		5.5
(-1.9)
P 		3.9
(-3)
A 		12.8
(3)
P 		8.6
(0.2)
A 		9
B 2
(-2.3)
A 		8
(0.1)
A 		0.3
(-3)
A 		7.3
(-0.2)
P 		15.2
(3)
P 		13.4
(2.3)
P 		15
C 0.9
(-3)
A 		11.9
(2.2)
P 		11.7
(2.1)
A 		8.3
(0.5)
A 		10.1
(1.3)
P 		13.7
(3)
P 		13
avr 3.6
(-3) 		9.1
(0.6) 		5.8
(-1.5) 		6.5
(-1.1) 		12.7
(3) 		11.9
(2.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184048_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.959
Sequence Type Exemplar sequence
Representative Public ID ZK1225.5 NCBI
Target Description ZK1225.5 /REP_DB=WormBase Gene ID /WP=CE19344 /TR=Q9XXL1 /GB=CAA18376.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060916 NCBI Caenorhabditis elegans ZK1225.5 (ZK1225.5) mRNA, complete cds. 11/11 None
GENEFINDER00000029398 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13218704:13227206:-1 10/11 None
SNAP00000029392 ENSEMBL cdna:SNAP chromosome:CEL140:I:13224742:13226964:-1 11/11 None
ZK1225.5 ENSEMBL cdna:known chromosome:CEL140:I:13224724:13226964:-1 gene:ZK1225.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13224672-13226895(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1225.5
Entrez Gene 173186 Entrez gene
SwissProt Q9XXL1 EMBL-EBI
WormBase CE19344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18376 Hypothetical protein ZK1225.5 [Caenorhabditis elegans] ref|NP_493317.1| ZK1225.5 [Caenorhabditis elegans] 0.0
blast CAA18371 Hypothetical protein ZK1225.4 [Caenorhabditis elegans] ref|NP_493316.1| ZK1225.4 [Caenorhabditis elegans] 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast CAA18371 Hypothetical protein ZK1225.4 [Caenorhabditis elegans] ref|NP_493316.1| ZK1225.4 [Caenorhabditis elegans] 1.0E-175
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 5.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Sequence
Target Sequence 
>C. ELEGANS:184048_S_AT
ataagttcgaagtgatgtgcccattagttgcagttccagagattgatttgatgaagaagc
acgcaatcgcttttaaccaggttattggagcaagaattcaaaagatggttgacgccccag
agatgtggtatacagcagttgatgctcttacaacattgactagccggaagtttgaaatta
gaaattgtgcagggctcaatggagagacaatggagaaggctaacaattttgcggatctga
cgcacaaattctgggagctgaacaaatctacaaacggacggatggaaggatacgacttgg
gtggaatcagtgaattctcagaaatttcggagaaagtatggttgtacatattcatcattt
ggacaccacaacctgaaatacttgtgcaccaatcgcaatggacatttggcttagaatgga
atagtgatttacaagctttttcgatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGTTCGAAGTGATGTGCCCATT 76 25 1037 Antisense
TGTGCCCATTAGTTGCAGTTCCAGA 484 555 1052 Antisense
GCACGCAATCGCTTTTAACCAGGTT 655 293 1095 Antisense
GGTTGACGCCCCAGAGATGTGGTAT 293 507 1143 Antisense
GGTATACAGCAGTTGATGCTCTTAC 230 505 1163 Antisense
GATGCTCTTACAACATTGACTAGCC 490 413 1177 Antisense
GGATCTGACGCACAAATTCTGGGAG 316 511 1269 Antisense
TACATATTCATCATTTGGACACCAC 139 645 1381 Antisense
TGGACACCACAACCTGAAATACTTG 161 547 1396 Antisense
GAAATACTTGTGCACCAATCGCAAT 676 361 1411 Antisense
GTGATTTACAAGCTTTTTCGATTTT 340 485 1460 Antisense
Sequence Source Affymetrix Proprietary Database