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[184047_at]

Description F09G2.6 /REP_DB=WormBase Gene ID /WP=CE09301 /TR=O17401 /GB=AAB71324.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 05      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 123.5
(-0.3)
M 		22.8
(-3)
A 		79.9
(-1.5)
A 		244.4
(3)
P 		222
B 162.5
(-0.2)
M 		11.3
(-3)
A 		55.2
(-2.2)
A 		336.6
(3)
P 		325
C 115.4
(-0.9)
A 		11
(-3)
A 		88.9
(-1.5)
A 		315.1
(3)
P 		304
avr 133.8
(-0.5) 		15
(-3) 		74.7
(-1.7) 		298.7
(3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 67.2
(-3)
A 		195.3
(-0.2)
P 		178.8
(-0.5)
P 		339
(3)
P 		188.5
(-0.3)
P 		289.5
(1.9)
P 		272
B 64.8
(-3)
A 		105.3
(-2.3)
A 		265.3
(0.6)
P 		154.7
(-1.4)
P 		159.6
(-1.3)
P 		394.6
(3)
P 		330
C 58
(-3)
A 		151.7
(-1.6)
A 		267.8
(0.1)
P 		158.7
(-1.5)
P 		122.8
(-2)
P 		465
(3)
P 		407
avr 63.3
(-3) 		150.8
(-1.4) 		237.3
(0.3) 		217.5
(-0.1) 		157
(-1.2) 		383
(3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 45
(3)
M 		4.9
(-3)
A 		20.9
(-0.6)
A 		35.8
(1.6)
P 		40
B 51.8
(1.3)
M 		2.8
(-3)
A 		12.8
(-2.1)
A 		71.7
(3)
P 		69
C 38.2
(1.2)
A 		3.2
(-3)
A 		31
(0.3)
A 		53.1
(3)
P 		50
avr 45
(2) 		3.6
(-3) 		21.6
(-0.8) 		53.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 12.4
(-3)
A 		69.4
(1.6)
P 		38.9
(-0.8)
P 		86
(3)
P 		56.9
(0.6)
P 		70.5
(1.7)
P 		74
B 22.5
(-3)
A 		35
(-2.4)
A 		64.4
(-1)
P 		41
(-2.1)
P 		64.8
(-1)
P 		147.1
(3)
P 		125
C 21.5
(-3)
A 		46.3
(-1.9)
A 		68.2
(-0.9)
P 		31.9
(-2.5)
P 		39.7
(-2.2)
P 		155.7
(3)
P 		134
avr 18.8
(-3) 		50.2
(-1.2) 		57.2
(-0.8) 		53
(-1.1) 		53.8
(-1) 		124.4
(3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11506
Sequence Type Exemplar sequence
Representative Public ID F09G2.6 NCBI
Target Description F09G2.6 /REP_DB=WormBase Gene ID /WP=CE09301 /TR=O17401 /GB=AAB71324.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072419 NCBI Caenorhabditis elegans F09G2.6 (F09G2.6) mRNA, complete cds. 11/11 None
SNAP00000025941 ENSEMBL cdna:SNAP chromosome:CEL140:V:7170004:7171797:1 11/11 None
GENEFINDER00000025951 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7167721:7175693:1 9/11 None
F09G2.6 ENSEMBL cdna:known chromosome:CEL140:V:7169421:7171797:1 gene:F09G2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7169421-7171798(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ugt-36
Ensembl F09G2.6
Entrez Gene 184266 Entrez gene
SwissProt O17401 EMBL-EBI
WormBase CE38498 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504820 F09G2.6 [Caenorhabditis elegans] gb|AAB71324.2| Hypothetical protein F09G2.6 [Caenorhabditis elegans] 0.0
blast NP_504811 F10D2.6 [Caenorhabditis elegans] gb|AAC48236.2| Hypothetical protein F10D2.6 [Caenorhabditis elegans] 0.0
blast CAE72011 Hypothetical protein CBG19092 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-20
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-49
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.8E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504820.2 2 12-34,488-510
F09G2.6 2 70-92,548-570
SNAP00000025941 1 397-419
GENEFINDER00000025951 5 30-52,92-114,216-238,792-814,826-845
Sequence
Target Sequence 
>C. ELEGANS:184047_AT
ttgggcaagtttcccgatgtgacttttatttggaaatacgagacaaacgatacaagtttt
gccaatggaactgagaatattcacttttctaattgggtgccacaaactgcacttttagct
gacccacgtctaagtgcattctttactcatgctggtttaggaagtgttaatgaagtcagt
tacctggggaaaccaactattatgtgtccaatatttgctgatcaaatgagaaatgccaaa
atgctggcaaggcataatggatcaatcgagatttcgaagtacgatttgtcaaatggagat
aaaattgaagaagcattgagtaaaatattgtttgatgaatcgtacaaaactgcggcggaa
aagctggcgcatcagcttgcaaatcagcctgtgaagccaaaggagttgctagtcaggcat
gcggagtttgcggctcagtttggccatcttccatctttggacccacattctcgtcagatg
tcatttattcaatatttcctaattgatcttactgccataatactttccactgtaatttta
tttctattcgtcctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGGCAAGTTTCCCGATGTGACTT 670 675 1168 Antisense
TAGCTGACCCACGTCTAAGTGCATT 532 651 1283 Antisense
AGTGCATTCTTTACTCATGCTGGTT 21 61 1300 Antisense
ACTGCGGCGGAAAAGCTGGCGCATC 334 99 1516 Antisense
GGCGCATCAGCTTGCAAATCAGCCT 69 543 1533 Antisense
GTCAGGCATGCGGAGTTTGCGGCTC 163 467 1579 Antisense
AGTTTGCGGCTCAGTTTGGCCATCT 511 63 1592 Antisense
ACCCACATTCTCGTCAGATGTCATT 491 89 1628 Antisense
ATTTCCTAATTGATCTTACTGCCAT 592 17 1661 Antisense
TTACTGCCATAATACTTTCCACTGT 687 681 1676 Antisense
GTAATTTTATTTCTATTCGTCCTGT 370 457 1699 Antisense
Sequence Source Affymetrix Proprietary Database