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[184046_at] 7TM chemoreceptor, srt family

Description F47D2.6 /REP_DB=WormBase Gene ID /WP=CE10696 /TR=Q22984 /GB=AAG24111.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 10      6grp_cgc > 90      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 6.5
(-2.8)
A 		3.1
(-3)
A 		2.8
(-3)
A 		133.7
(3)
A 		131
B 11.6
(-2.2)
A 		5.6
(-2.8)
A 		3.4
(-3)
A 		68.2
(3)
A 		65
C 7.7
(-2.9)
A 		48.9
(-0.5)
A 		6.2
(-3)
A 		110.1
(3)
A 		104
avr 8.6
(-2.7) 		19.2
(-2.1) 		4.1
(-3) 		104
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 46.3
(1.3)
A 		1.6
(-3)
A 		64.2
(3)
A 		5
(-2.7)
A 		48.3
(1.5)
A 		19
(-1.3)
A 		63
B 3.8
(-2.6)
A 		18.3
(0.3)
A 		3.7
(-2.7)
A 		2
(-3)
A 		32
(3)
A 		2.3
(-2.9)
A 		30
C 3.3
(-0.8)
A 		7.4
(3)
A 		5
(0.8)
A 		7
(2.6)
A 		6.1
(1.8)
A 		0.9
(-3)
A 		7
avr 17.8
(0.3) 		9.1
(-1.9) 		24.3
(1.9) 		4.7
(-3) 		28.8
(3) 		7.4
(-2.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.4
(-2.5)
A 		0.7
(-3)
A 		0.7
(-3)
A 		19.6
(3)
A 		19
B 3.7
(-1.7)
A 		1.4
(-2.7)
A 		0.8
(-3)
A 		14.5
(3)
A 		14
C 2.5
(-2.9)
A 		14.1
(1.4)
A 		2.2
(-3)
A 		18.6
(3)
A 		16
avr 2.9
(-2.4) 		5.4
(-1.5) 		1.2
(-3) 		17.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.5
(0.4)
A 		0.6
(-3)
A 		14
(2.7)
A 		1.3
(-2.7)
A 		14.6
(3)
A 		4.6
(-1.3)
A 		14
B 1.3
(-2.6)
A 		6.1
(-0.3)
A 		0.9
(-2.8)
A 		0.5
(-3)
A 		13
(3)
A 		0.8
(-2.9)
A 		13
C 1.2
(-0.3)
A 		2.3
(3)
A 		1.3
(0)
A 		1.4
(0.3)
A 		2
(2.1)
A 		0.3
(-3)
A 		2
avr 3.7
(-1.2) 		3
(-1.7) 		5.4
(-0.1) 		1.1
(-3) 		9.9
(3) 		1.9
(-2.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15446
Sequence Type Exemplar sequence
Representative Public ID F47D2.6 NCBI
Target Description F47D2.6 /REP_DB=WormBase Gene ID /WP=CE10696 /TR=Q22984 /GB=AAG24111.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071777 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-38) (srt-38) mRNA, complete cds. 11/11 None
SNAP00000032764 ENSEMBL cdna:SNAP chromosome:CEL140:V:4269300:4271172:-1 11/11 None
F47D2.6 ENSEMBL cdna:known chromosome:CEL140:V:4269300:4271172:-1 gene:F47D2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032780 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4269299-4271172(-) 97.87 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-38
Ensembl F47D2.6
Entrez Gene 185927 Entrez gene
SwissProt Q22984 EMBL-EBI
WormBase CE10696 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24111 Serpentine receptor, class t protein 38 [Caenorhabditis elegans] ref|NP_504178.1| Serpentine Receptor, class T family member (srt-38) [Caenorhabditis elegans] 1.0E-179
blast AAG24114 Serpentine receptor, class t protein 36 [Caenorhabditis elegans] ref|NP_504177.1| Serpentine Receptor, class T family member (srt-36) [Caenorhabditis elegans] 1.0E-146
blast AAG24116 Serpentine receptor, class t protein 37 [Caenorhabditis elegans] ref|NP_504181.2| Serpentine Receptor, class T family member (srt-37) [Caenorhabditis elegans] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504178.1 7 37-59,72-94,109-131,152-174,200-219,240-262,272-294
F47D2.6 7 37-59,72-94,109-131,152-174,200-219,240-262,272-294
SNAP00000032764 7 37-59,72-94,109-131,152-174,200-219,240-262,272-294
Sequence
Target Sequence 
>C. ELEGANS:184046_AT
tctcaacgacgttcaatcattgtcaagggttcaaagtgtgaaagtccaagttttcgtcca
atcgtttcttatctgcgttgccacacagcttgctggtatcatttatgtattcatgaattt
attccaagtttccacatgtgtgactgtcattggtcatgcactgtggcaattcgttcaagg
agcacctgcattcatctatattgggctcaatgaactaattcgcaaacgcttttctaaatt
tttaaaatgccagaaaaatgttgtaacgccatctgtacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCAACGACGTTCAATCATTGTCA 289 613 687 Antisense
TCCAAGTTTTCGTCCAATCGTTTCT 77 587 731 Antisense
CCAATCGTTTCTTATCTGCGTTGCC 435 277 744 Antisense
CGTTGCCACACAGCTTGCTGGTATC 496 247 762 Antisense
TATTCCAAGTTTCCACATGTGTGAC 131 663 806 Antisense
GACTGTCATTGGTCATGCACTGTGG 573 375 828 Antisense
TGCACTGTGGCAATTCGTTCAAGGA 595 577 843 Antisense
CAAGGAGCACCTGCATTCATCTATA 683 181 862 Antisense
CCTGCATTCATCTATATTGGGCTCA 467 265 871 Antisense
GAACTAATTCGCAAACGCTTTTCTA 233 349 898 Antisense
AAATGTTGTAACGCCATCTGTACAC 47 121 942 Antisense
Sequence Source Affymetrix Proprietary Database