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[184044_at]

Description T10D4.3 /REP_DB=WormBase Gene ID /WP=CE20043 /TR=Q9TZF2 /GB=AAC68716.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 79      6grp_total > 89      4grp_total > 04      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 103
(-0.5)
P 		27.7
(-2.4)
A 		4
(-3)
A 		245.9
(3)
P 		242
B 109.9
(-1.9)
P 		69.4
(-2.8)
A 		60.1
(-3)
A 		333.3
(3)
P 		273
C 108.6
(-1.5)
P 		48.4
(-3)
A 		73.6
(-2.4)
A 		293.6
(3)
P 		245
avr 107.2
(-1.5) 		48.5
(-2.9) 		45.9
(-3) 		290.9
(3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 122.3
(-1.3)
P 		106
(-2.2)
P 		92.1
(-3)
A 		91.5
(-3)
P 		130.5
(-0.9)
P 		202.7
(3)
P 		111
B 64.4
(-2.5)
P 		79.6
(-1.4)
P 		56.7
(-3)
A 		82.4
(-1.2)
A 		141.8
(3)
P 		134.4
(2.5)
P 		85
C 170.1
(3)
P 		77.9
(-3)
P 		98.6
(-1.7)
P 		81.6
(-2.8)
P 		139.2
(1)
P 		143
(1.2)
P 		92
avr 118.9
(-0.2) 		87.8
(-2.6) 		82.5
(-3) 		85.2
(-2.8) 		137.2
(1.2) 		160
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 37.5
(3)
P 		6
(-2.2)
A 		1
(-3)
A 		36
(2.8)
P 		37
B 35.1
(-0.8)
P 		17.1
(-2.7)
A 		13.9
(-3)
A 		71
(3)
P 		57
C 35.9
(0.7)
P 		13.9
(-3)
A 		25.6
(-1)
A 		49.5
(3)
P 		36
avr 36.2
(0.6) 		12.3
(-3) 		13.5
(-2.8) 		52.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 22.5
(-2.5)
P 		37.7
(0.6)
P 		20.1
(-3)
A 		23.2
(-2.4)
P 		39.4
(1)
P 		49.4
(3)
P 		29
B 22.4
(-1.8)
P 		26.5
(-1.3)
P 		13.8
(-3)
A 		21.8
(-1.9)
A 		57.6
(3)
P 		50.1
(2)
P 		44
C 63.1
(3)
P 		23.8
(-2)
P 		25.1
(-1.9)
P 		16.4
(-3)
P 		45
(0.7)
P 		47.9
(1)
P 		47
avr 36
(0.3) 		29.3
(-1) 		19.7
(-3) 		20.5
(-2.8) 		47.3
(2.6) 		49.1
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4198
Sequence Type Exemplar sequence
Representative Public ID T10D4.3 NCBI
Target Description T10D4.3 /REP_DB=WormBase Gene ID /WP=CE20043 /TR=Q9TZF2 /GB=AAC68716.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062054(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062054 NCBI Caenorhabditis elegans T10D4.3 (T10D4.3) mRNA, complete cds. 11/11 None
SNAP00000032457 ENSEMBL cdna:SNAP chromosome:CEL140:II:3128042:3139204:1 11/11 None
GENEFINDER00000032468 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3129174:3135278:1 11/11 None
T10D4.3 ENSEMBL cdna:known chromosome:CEL140:II:3129174:3131283:1 gene:T10D4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3129172-3131282(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10D4.3
Entrez Gene 173661 Entrez gene
SwissProt Q9TZF2 EMBL-EBI
WormBase CE20043 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68716 Hypothetical protein T10D4.3 [Caenorhabditis elegans] ref|NP_494455.1| T10D4.3 [Caenorhabditis elegans] 0.0
blast T33547 hypothetical protein T10D4.2 - Caenorhabditis elegans 1.0E-108
blast CAE59369 Hypothetical protein CBG02718 [Caenorhabditis briggsae] 3.0E-93
blast CAE59369 Hypothetical protein CBG02718 [Caenorhabditis briggsae] 4.0E-93
blast CAE59369 Hypothetical protein CBG02718 [Caenorhabditis briggsae] 6.0E-93
blast CAE59362 Hypothetical protein CBG02711 [Caenorhabditis briggsae] 4.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 8.9E-116
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 8.9E-116
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032468 5 433-455,467-489,553-575,596-618,628-650
Sequence
Target Sequence 
>C. ELEGANS:184044_AT
ggagctgggctacgatttgagaacaatttcaagccacgtggatttcttcaatgtgcattc
catggactactatgggccgtggccgaatgaatgggggaagccaaccgggccgatctctcc
gctgtacgggcctacacgtcataatgtggactggactttgagatactatgccgagaagac
aggtgagcctggaaagttaaacatggtgattccattctttgtgcggctctggaaaaatgt
cccggagcccgttgagccgggacggcaagtgttccgagacgtggagcttgtggataacaa
gcctcagggagaagcctacatgtctagatggtcagcacagcatgaggagttggatctaag
cccagctgattgggatgaagagactagaagctcctatacctggaacccggacaccaggaa
ctttgtaacatttgagaccgacaagagcatccaggaaaagatgaaatatgtgaaggagaa
gaatcttggaggagtatggatctggcatgtggatgcgaatgagaagctgctggattcggt
tcggtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTGGGCTACGATTTGAGAACA 514 519 630 Antisense
GGGCCGTGGCCGAATGAATGGGGGA 525 489 703 Antisense
CTGTACGGGCCTACACGTCATAATG 607 237 751 Antisense
CATTCTTTGTGCGGCTCTGGAAAAA 34 217 842 Antisense
TCTGGAAAAATGTCCCGGAGCCCGT 284 605 857 Antisense
GCCGGGACGGCAAGTGTTCCGAGAC 354 283 885 Antisense
GAAGCCTACATGTCTAGATGGTCAG 216 345 940 Antisense
GGAGTTGGATCTAAGCCCAGCTGAT 64 519 975 Antisense
CTAGAAGCTCCTATACCTGGAACCC 28 225 1013 Antisense
GAGACCGACAAGAGCATCCAGGAAA 209 395 1063 Antisense
AAGCTGCTGGATTCGGTTCGGTTTG 538 147 1153 Antisense
Sequence Source Affymetrix Proprietary Database