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[184042_at]

Description C15F1.8 /REP_DB=WormBase Gene ID /WP=CE23551 /TR=Q9N5Y0 /GB=AAF39760.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 40.7
(-1.1)
A 		7.4
(-3)
A 		7.4
(-3)
A 		114.9
(3)
A 		108
B 49.6
(2.3)
A 		55.4
(3)
A 		5.3
(-3)
A 		38.8
(1)
A 		50
C 46.1
(-3)
A 		55.1
(-2.3)
A 		64.1
(-1.5)
A 		120.3
(3)
A 		74
avr 45.5
(-1.2) 		39.3
(-1.7) 		25.6
(-3) 		91.3
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 18.9
(-3)
A 		53.5
(-1.7)
A 		45
(-2)
A 		39.1
(-2.2)
A 		23.8
(-2.8)
A 		176.5
(3)
A 		158
B 35.3
(-3)
A 		55.8
(-2.2)
A 		82.3
(-1.2)
A 		111.7
(-0.1)
A 		86.4
(-1)
A 		190.7
(3)
P 		155
C 30.6
(-2.4)
A 		11.8
(-2.9)
A 		8.5
(-3)
A 		83.5
(-0.8)
A 		77
(-1)
A 		212.7
(3)
P 		204
avr 28.3
(-3) 		40.4
(-2.6) 		45.3
(-2.4) 		78.1
(-1.2) 		62.4
(-1.8) 		193.3
(3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.8
(2.2)
A 		1.6
(-3)
A 		1.9
(-2.9)
A 		16.8
(3)
A 		15
B 15.8
(3)
A 		13.7
(2.1)
A 		1.2
(-3)
A 		8.3
(-0.1)
A 		15
C 15.3
(-3)
A 		15.9
(-2.5)
A 		22.3
(3)
A 		20.3
(1.3)
A 		7
avr 15.3
(3) 		10.4
(-1.3) 		8.5
(-3) 		15.1
(2.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 3.5
(-3)
A 		19
(-0.6)
A 		9.8
(-2)
A 		9.9
(-2)
A 		7.2
(-2.4)
A 		43
(3)
A 		40
B 12.3
(-3)
A 		18.6
(-2.4)
A 		20
(-2.2)
A 		29.6
(-1.2)
A 		35.1
(-0.7)
A 		71.1
(3)
P 		59
C 11.3
(-2.2)
A 		3.6
(-2.9)
A 		2.2
(-3)
A 		16.8
(-1.7)
A 		24.9
(-1)
A 		71.2
(3)
P 		69
avr 9
(-3) 		13.7
(-2.5) 		10.7
(-2.8) 		18.8
(-1.9) 		22.4
(-1.5) 		61.8
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4524
Sequence Type Exemplar sequence
Representative Public ID C15F1.8 NCBI
Target Description C15F1.8 /REP_DB=WormBase Gene ID /WP=CE23551 /TR=Q9N5Y0 /GB=AAF39760.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063031 NCBI Caenorhabditis elegans C15F1.8 (C15F1.8) mRNA, complete cds. 11/11 None
SNAP00000007587 ENSEMBL cdna:SNAP chromosome:CEL140:II:6976741:6977298:-1 11/11 None
C15F1.8 ENSEMBL cdna:known chromosome:CEL140:II:6976741:6977298:-1 gene:C15F1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060404 5/11 Cross Hyb Matching Probes None
GENEFINDER00000024682 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007591 8/11 Cross Hyb Matching Probes None
B0205.1 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6976736-6977294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15F1.8
Entrez Gene 174142 Entrez gene
SwissProt Q9N5Y0 EMBL-EBI
WormBase CE23551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39760 Hypothetical protein C15F1.8 [Caenorhabditis elegans] ref|NP_495432.1| C15F1.8 [Caenorhabditis elegans] 3.0E-81
Sequence
Target Sequence 
>C. ELEGANS:184042_AT
ggaaaaggcgggcagcacagattgaaagtagccgtaaaggcgtcgccagcattcgagctc
gttgtgatatggaggcttcctgttccagttcccaagagaacgaggcttcgcgtgcatcta
ccagtcaatgcagttccccgaaaaatttgaaaatggaaaatgttactatcttgccaaaaa
cattgaagctgatacatgatgatccgaagagtcaagtaattgtttcaatacaatttgaga
tagaagatactaaaaaaaaaatatcagctgccattctaaacttcaatatctctaaaaaag
cgaataatgcgataagaagtgagagaaagcggatcgtggcaacgatactcaagactcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAAGGCGGGCAGCACAGATTGA 693 527 23 Antisense
AAGTAGCCGTAAAGGCGTCGCCAGC 285 157 48 Antisense
GCCAGCATTCGAGCTCGTTGTGATA 623 277 67 Antisense
GATATGGAGGCTTCCTGTTCCAGTT 691 425 88 Antisense
AGAGAACGAGGCTTCGCGTGCATCT 539 69 117 Antisense
TTCGCGTGCATCTACCAGTCAATGC 22 697 129 Antisense
CAGTCAATGCAGTTCCCCGAAAAAT 555 207 144 Antisense
GGAAAATGTTACTATCTTGCCAAAA 597 527 177 Antisense
ATATCAGCTGCCATTCTAAACTTCA 428 19 283 Antisense
GAGAGAAAGCGGATCGTGGCAACGA 319 395 343 Antisense
GTGGCAACGATACTCAAGACTCGGA 278 491 358 Antisense
Sequence Source Affymetrix Proprietary Database