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[184041_at]

Description F09G2.2 /REP_DB=WormBase Gene ID /WP=CE09297 /TR=O17407 /GB=AAB71318.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 49      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 78      6grp_total > 49      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3386
1 2 3 4 range
A 1881.2
(-2.6)
P 		1688.1
(-3)
P 		1804.5
(-2.8)
P 		4837.9
(3)
P 		3150
B 1903.9
(-2.5)
P 		1724.9
(-3)
P 		1909.9
(-2.5)
P 		3902.1
(3)
P 		2177
C 1927.6
(-2)
P 		1859.9
(-2.1)
P 		1452.1
(-3)
P 		4277.6
(3)
P 		2826
avr 1904.2
(-2.6) 		1757.6
(-2.9) 		1722.2
(-3) 		4339.2
(3) 		2617

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1313
1 2 3 4 5 6 range
A 1535.9
(-0.5)
P 		1402.2
(-1.3)
P 		1112.4
(-3)
P 		1425.3
(-1.1)
P 		1832.6
(1.3)
P 		2123.5
(3)
P 		1011
B 1824.1
(3)
P 		1430.6
(0.7)
P 		810.7
(-3)
P 		1405.6
(0.5)
P 		1583.6
(1.6)
P 		1715.6
(2.4)
P 		1013
C 1709.6
(2.8)
P 		1350.5
(-2.4)
P 		1362
(-2.2)
P 		1306.4
(-3)
P 		1692.6
(2.6)
P 		1722.3
(3)
P 		416
avr 1689.9
(1.7) 		1394.4
(-0.6) 		1095
(-3) 		1379.1
(-0.8) 		1702.9
(1.8) 		1853.8
(3) 		759
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 684.9
(2.6)
P 		366.4
(-3)
P 		471.7
(-1.2)
P 		708.2
(3)
P 		342
B 607.1
(-0.3)
P 		426
(-3)
P 		442.6
(-2.8)
P 		831.5
(3)
P 		406
C 638.1
(0.7)
P 		534.7
(-2.2)
P 		506.1
(-3)
P 		721.3
(3)
P 		215
avr 643.4
(0.9) 		442.4
(-3) 		473.5
(-2.4) 		753.7
(3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 283.1
(-2.2)
P 		498.7
(2)
P 		242.3
(-3)
P 		361.5
(-0.7)
P 		553
(3)
P 		517
(2.3)
P 		311
B 634.7
(2.9)
P 		476.2
(0.8)
P 		196.9
(-3)
P 		372.3
(-0.6)
P 		643.4
(3)
P 		639.7
(3)
P 		447
C 633.7
(3)
P 		412.1
(-0.6)
P 		346.7
(-1.6)
P 		262.7
(-3)
P 		547.7
(1.6)
P 		576.6
(2.1)
P 		371
avr 517.2
(1.8) 		462.3
(0.8) 		262
(-3) 		332.2
(-1.7) 		581.4
(3) 		577.8
(2.9) 		319
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184041_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12485
Sequence Type Exemplar sequence
Representative Public ID F09G2.2 NCBI
Target Description F09G2.2 /REP_DB=WormBase Gene ID /WP=CE09297 /TR=O17407 /GB=AAB71318.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072425 NCBI Caenorhabditis elegans F09G2.2 (F09G2.2) mRNA, complete cds. 11/11 None
SNAP00000025948 ENSEMBL cdna:SNAP chromosome:CEL140:V:7199508:7200840:1 11/11 None
GENEFINDER00000025957 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7199508:7200840:1 11/11 None
F09G2.2 ENSEMBL cdna:known chromosome:CEL140:V:7199508:7201011:1 gene:F09G2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7199211-7200841(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09G2.2
Entrez Gene 179107 Entrez gene
SwissProt O17407 EMBL-EBI
WormBase CE37626 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18052.1.S1_S_AT similar to CG40191-PB.3 cfa
CANINE_2:CFA.8535.1.A1_AT similar to CG40191-PB.3 cfa
CANINE_2:CFAAFFX.23184.1.S1_AT similar to CG40191-PB.3 cfa
CHICKEN:GGA.2905.1.S1_S_AT similar to chromosome 2 open reading frame 24 gga
PLASMODIUM_ANOPHELES:200070_AT chromosome 2 open reading frame 24 hs
HG-U133A:200070_AT chromosome 2 open reading frame 24 hs
HG-U133B:200070_AT chromosome 2 open reading frame 24 hs
HG-U133A_2:200070_AT chromosome 2 open reading frame 24 hs
HG-U133_PLUS_2:200070_AT chromosome 2 open reading frame 24 hs
HG-FOCUS:200070_AT chromosome 2 open reading frame 24 hs
U133_X3P:200070_AT chromosome 2 open reading frame 24 hs
HG-U133_PLUS_2:207511_S_AT chromosome 2 open reading frame 24 hs
HG-U133A:207511_S_AT chromosome 2 open reading frame 24 hs
HG-U133A_2:207511_S_AT chromosome 2 open reading frame 24 hs
HU35KSUBA:RC_AA412483_AT chromosome 2 open reading frame 24 hs
U133_X3P:G7661543_3P_A_AT chromosome 2 open reading frame 24 hs
U133_X3P:G12655084_3P_AT chromosome 2 open reading frame 24 hs
HG-U95AV2:34864_AT chromosome 2 open reading frame 24 hs
HG-U95D:89419_AT chromosome 2 open reading frame 24 hs
HU35KSUBC:RC_D20408_AT Chromosome 2 open reading frame 24 hs
MG-U74BV2:112817_AT RIKEN cDNA 1810031K17 gene mm
MG-U74BV2:164788_F_AT RIKEN cDNA 1810031K17 gene mm
MG-U74BV2:162709_AT RIKEN cDNA 1810031K17 gene mm
MG-U74CV2:169376_R_AT RIKEN cDNA 1810031K17 gene mm
MOE430A:1427879_AT RIKEN cDNA 1810031K17 gene mm
MOUSE430A_2:1427879_AT RIKEN cDNA 1810031K17 gene mm
MOUSE430_2:1427879_AT RIKEN cDNA 1810031K17 gene mm
MU19KSUBA:TC25558_AT RIKEN cDNA 1810031K17 gene, mRNA (cDNA clone MGC:36250 IMAGE:5126467) mm
MU19KSUBA:TC25559_AT RIKEN cDNA 1810031K17 gene, mRNA (cDNA clone MGC:36250 IMAGE:5126467) mm
MU19KSUBA:TC25559_G_AT RIKEN cDNA 1810031K17 gene, mRNA (cDNA clone MGC:36250 IMAGE:5126467) mm
MU19KSUBC:TC41318_AT RIKEN cDNA 1810031K17 gene, mRNA (cDNA clone MGC:36250 IMAGE:5126467) mm
RG-U34A:RC_AA891821_AT Unknown (protein for MGC:72616) rn
RAE230A:1372871_AT Unknown (protein for MGC:72616) rn
RAT230_2:1372871_AT Unknown (protein for MGC:72616) rn
Protein Similarities
Method ID Description E-Value
blast NP_504826 F09G2.2 [Caenorhabditis elegans] gb|AAB71318.2| Hypothetical protein F09G2.2 [Caenorhabditis elegans] 1.0E-176
blast NP_504826 F09G2.2 [Caenorhabditis elegans] gb|AAB71318.2| Hypothetical protein F09G2.2 [Caenorhabditis elegans] 1.0E-172
blast CAE72019 Hypothetical protein CBG19101 [Caenorhabditis briggsae] 1.0E-143
blast CAE72019 Hypothetical protein CBG19101 [Caenorhabditis briggsae] 1.0E-140
blast XP_623650 PREDICTED: hypothetical protein XP_623647 [Apis mellifera] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:184041_AT
tacgaccgcgtttctaactcagaatgggctgaatcactgaaaatgacaccggaagatctg
aatgcgaaggaatggaatttagtaaaaaatctcgattggaacgtagctgtgaagaacgac
gaatttgaaaattatctagacaatatggagaaatgggtggctggatcatttgtagagaag
aacgggtttatgacatacaatgagcttttgcaattgtcgtcaatggttcctattatggac
atcgtcaagcaattgattgaattcatcagctccacatctcttatctactgcttgactctc
gcgttgatgtcgactaccttgtccactgtttccgagccatcgacctcagctgacgtcact
tcaccaaaagacaacaatcagactttctcgccagtcttcctgtcgccacgaaccagatcc
catcctagcaccaccgagtttggtttcgaattcgatgaaaacgagtggacagtcgaagaa
gacgtcgagttcgagaaggagaatgggacatcaaccgatttatgtccatttgaatctgct
cgccgagccatcgataaatttcgactcgccctttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGACCGCGTTTCTAACTCAGAAT 281 649 514 Antisense
TGGGTGGCTGGATCATTTGTAGAGA 289 553 667 Antisense
AATTGTCGTCAATGGTTCCTATTAT 182 179 725 Antisense
GATTGAATTCATCAGCTCCACATCT 184 435 768 Antisense
TGCTTGACTCTCGCGTTGATGTCGA 259 579 802 Antisense
TCGCGTTGATGTCGACTACCTTGTC 3 601 812 Antisense
GACAACAATCAGACTTTCTCGCCAG 69 367 883 Antisense
CATCCTAGCACCACCGAGTTTGGTT 692 207 934 Antisense
TTATGTCCATTTGAATCTGCTCGCC 224 681 1033 Antisense
TCTGCTCGCCGAGCCATCGATAAAT 99 609 1048 Antisense
TCGATAAATTTCGACTCGCCCTTTC 496 601 1064 Antisense
Sequence Source Affymetrix Proprietary Database