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[184040_s_at]

Description C29F5.5 /REP_DB=WormBase Gene ID /WP=CE02512 /TR=Q18307 /GB=AAC46824.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 08      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 4.5
(-3)
A 		11
(-2.3)
A 		20.9
(-1.2)
A 		59.8
(3)
A 		55
B 8.7
(3)
A 		7.8
(1.4)
A 		5.3
(-3)
A 		7.7
(1.2)
A 		3
C 2.2
(-3)
A 		6.7
(-2.3)
A 		20.3
(-0.1)
A 		39.1
(3)
A 		37
avr 5.1
(-3) 		8.5
(-2.3) 		15.5
(-0.9) 		35.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.5
(-1.2)
A 		2.4
(-3)
A 		12.5
(3)
A 		8.1
(0.4)
A 		4.5
(-1.8)
A 		2.4
(-3)
A 		10
B 2
(-3)
A 		8.6
(3)
A 		5.6
(0.3)
A 		8
(2.5)
A 		3.6
(-1.5)
A 		5
(-0.3)
A 		7
C 3.7
(-2.2)
A 		6.9
(1.1)
A 		4
(-1.9)
A 		8.8
(3)
A 		4.1
(-1.8)
A 		2.9
(-3)
A 		6
avr 3.7
(-2.6) 		6
(0.2) 		7.4
(1.9) 		8.3
(3) 		4.1
(-2.1) 		3.4
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.6
(-3)
A 		2.4
(-2.3)
A 		5.5
(0.3)
A 		8.8
(3)
A 		7
B 2.8
(3)
A 		1.9
(-0.4)
A 		1.2
(-3)
A 		1.6
(-1.5)
A 		2
C 0.7
(-3)
A 		1.9
(-1.9)
A 		7.1
(3)
A 		6.6
(2.5)
A 		6
avr 1.7
(-3) 		2.1
(-2.4) 		4.6
(1.4) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1
(-1.9)
A 		0.9
(-2.1)
A 		2.7
(3)
A 		2.1
(1.3)
A 		1.4
(-0.7)
A 		0.6
(-3)
A 		2
B 0.7
(-3)
A 		2.9
(3)
A 		1.4
(-1.1)
A 		2.1
(0.8)
A 		1.5
(-0.8)
A 		1.9
(0.3)
A 		2
C 1.4
(-0.8)
A 		2.1
(3)
A 		1
(-3)
A 		1.8
(1.4)
A 		1.3
(-1.4)
A 		1
(-3)
A 		1
avr 1
(-3) 		2
(3) 		1.7
(1.2) 		2
(3) 		1.4
(-0.6) 		1.2
(-1.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184040_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4195
Sequence Type Exemplar sequence
Representative Public ID C29F5.5 NCBI
Target Description C29F5.5 /REP_DB=WormBase Gene ID /WP=CE02512 /TR=Q18307 /GB=AAC46824.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062864(10), NM_062863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062864 NCBI Caenorhabditis elegans C29F5.2 (C29F5.2) mRNA, complete cds. 10/11 A 
NM_062863 NCBI Caenorhabditis elegans C29F5.5 (C29F5.5) mRNA, complete cds. 11/11 A 
SNAP00000032520 ENSEMBL cdna:SNAP chromosome:CEL140:II:6297191:6298623:-1 11/11 None
SNAP00000032521 ENSEMBL cdna:SNAP chromosome:CEL140:II:6299450:6301346:1 11/11 None
GENEFINDER00000032526 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6297191:6298623:-1 11/11 None
GENEFINDER00000032527 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6299450:6301346:1 11/11 None
C29F5.5 ENSEMBL cdna:known chromosome:CEL140:II:6297191:6298623:-1 gene:C29F5.5 11/11 A 
C29F5.2 ENSEMBL cdna:known chromosome:CEL140:II:6299475:6301346:1 gene:C29F5.2 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6297187-6298620(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol sdz-3
Ensembl C29F5.5
C29F5.2
Entrez Gene 183010 Entrez gene
183013 Entrez gene
SwissProt Q18308 EMBL-EBI
Q18307 EMBL-EBI
WormBase CE36105 Wormbase
CE02512 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 1.0E-133
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 1.0E-129
blast NP_495265 C29F5.2 [Caenorhabditis elegans] gb|AAC46821.2| Hypothetical protein C29F5.2 [Caenorhabditis elegans] 1.0E-113
blast NP_495264 C29F5.5 [Caenorhabditis elegans] gb|AAC46824.1| Hypothetical protein C29F5.5 [Caenorhabditis elegans] 1.0E-101
blast NP_495264 C29F5.5 [Caenorhabditis elegans] gb|AAC46824.1| Hypothetical protein C29F5.5 [Caenorhabditis elegans] 5.0E-84
blast NP_495264 C29F5.5 [Caenorhabditis elegans] gb|AAC46824.1| Hypothetical protein C29F5.5 [Caenorhabditis elegans] 5.0E-79
blast AAC26936 Hypothetical protein F36H12.14 [Caenorhabditis elegans] ref|NP_500762.1| F36H12.14 [Caenorhabditis elegans] 7.0E-35
blast NP_495264 C29F5.5 [Caenorhabditis elegans] gb|AAC46824.1| Hypothetical protein C29F5.5 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495264.1 1 74-96
C29F5.5 1 74-96
SNAP00000032520 1 116-138
Sequence
Target Sequence 
>C. ELEGANS:184040_S_AT
gaatgtgatatcatggatttggacataatgatcaaagatacgaacgggaactggaagccc
tacaaaattattgttcagaatatggcgaatgatggtcaacatgccccggctactccaaga
gcccatcaaaatgacgcggagcctcgattccaatttgcaactcctcgaacttttggactc
agtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTGATATCATGGATTTGGACA 55 333 16 Antisense
GATACGAACGGGAACTGGAAGCCCT 248 271 52 Antisense
GAACTGGAAGCCCTACAAAATTATT 305 349 63 Antisense
GGCGAATGATGGTCAACATGCCCCG 232 543 99 Antisense
CGGCTACTCCAAGAGCCCATCAAAA 206 241 122 Antisense
GAGCCCATCAAAATGACGCGGAGCC 93 385 134 Antisense
CAAAATGACGCGGAGCCTCGATTCC 195 191 142 Antisense
AGCCTCGATTCCAATTTGCAACTCC 708 83 155 Antisense
GATTCCAATTTGCAACTCCTCGAAC 11 431 161 Antisense
GCAACTCCTCGAACTTTTGGACTCA 444 319 172 Antisense
ACTCCTCGAACTTTTGGACTCAGTC 155 97 175 Antisense
Sequence Source Affymetrix Proprietary Database