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[184039_at]

Description C29F5.5 /REP_DB=WormBase Gene ID /WP=CE02512 /TR=Q18307 /GB=AAC46824.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 3.8
(3)
A 		1.9
(-3)
A 		2.1
(-2.4)
A 		3.3
(1.4)
A 		2
B 4.8
(3)
A 		3.4
(-1.4)
A 		2.9
(-3)
A 		3.1
(-2.4)
A 		2
C 3.4
(-2.7)
A 		5.5
(-2.4)
A 		1.5
(-3)
A 		43.9
(3)
A 		42
avr 4
(-2.3) 		3.6
(-2.4) 		2.2
(-3) 		16.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2.6
(-2.3)
A 		6.8
(-0.2)
A 		13.5
(3)
A 		2
(-2.6)
A 		5
(-1.1)
A 		12
B 0.7
(-3)
A 		2.1
(-0.8)
A 		3.7
(1.6)
A 		3.1
(0.7)
A 		1.2
(-2.2)
A 		4.6
(3)
A 		4
C 2.8
(-2)
A 		2.3
(-2.7)
A 		6.5
(3)
A 		3.5
(-1.1)
A 		5.7
(1.9)
A 		2.1
(-3)
A 		4
avr 1.5
(-3) 		2.3
(-2.1) 		5.7
(1.8) 		6.7
(3) 		3
(-1.3) 		3.9
(-0.2) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(3)
A 		0.4
(-3)
A 		0.6
(-1.8)
A 		0.5
(-2.4)
A 		1
B 1.5
(3)
A 		0.8
(-2.3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1
C 1.1
(-2.5)
A 		1.6
(-2)
A 		0.5
(-3)
A 		7.4
(3)
A 		7
avr 1.3
(-1.2) 		0.9
(-2.2) 		0.6
(-3) 		2.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.9
(-1.7)
A 		1.5
(-0.6)
A 		3.4
(3)
A 		0.6
(-2.3)
A 		1.2
(-1.1)
A 		3
B 0.2
(-3)
A 		0.7
(-1)
A 		0.9
(-0.2)
A 		0.8
(-0.6)
A 		0.5
(-1.8)
A 		1.7
(3)
A 		2
C 1
(-1.5)
A 		0.7
(-3)
A 		1.7
(2)
A 		0.7
(-3)
A 		1.9
(3)
A 		0.7
(-3)
A 		1
avr 0.5
(-3) 		0.8
(-1.4) 		1.4
(1.9) 		1.6
(3) 		1
(-0.3) 		1.2
(0.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4195
Sequence Type Exemplar sequence
Representative Public ID C29F5.5 NCBI
Target Description C29F5.5 /REP_DB=WormBase Gene ID /WP=CE02512 /TR=Q18307 /GB=AAC46824.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062863 NCBI Caenorhabditis elegans C29F5.5 (C29F5.5) mRNA, complete cds. 11/11 A 
C29F5.5 ENSEMBL cdna:known chromosome:CEL140:II:6297191:6298623:-1 gene:C29F5.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032520 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032526 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6297187-6298620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F5.5
Entrez Gene 183013 Entrez gene
SwissProt Q18307 EMBL-EBI
WormBase CE02512 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495264 C29F5.5 [Caenorhabditis elegans] gb|AAC46824.1| Hypothetical protein C29F5.5 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495264.1 1 74-96
C29F5.5 1 74-96
Sequence
Target Sequence 
>C. ELEGANS:184039_AT
ggactcagtccaaggcacgagcagccacattcggcgattgctctctttcttcgcttcgtt
caacttatgttcttcaattttcttatcaatgttctgctttatggatttattcagttctta
gcgagaggatcacggatctgggaaaagagtggagagcggtgcttcgtcgactgctcaatc
gaaggtacccaaaaatgctatggctggtttcgatggaagtggaacaatatggatgaggtg
tggatagacgttgtcgagcaacgagcacgtgcattggatgaagctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTCAGTCCAAGGCACGAGCAGC 654 523 190 Antisense
AGCAGCCACATTCGGCGATTGCTCT 614 77 209 Antisense
TTTCTTCGCTTCGTTCAACTTATGT 143 673 235 Antisense
CAACTTATGTTCTTCAATTTTCTTA 368 189 250 Antisense
ATGTTCTGCTTTATGGATTTATTCA 469 47 278 Antisense
GTTCTTAGCGAGAGGATCACGGATC 367 441 303 Antisense
AGAGTGGAGAGCGGTGCTTCGTCGA 272 69 335 Antisense
GACTGCTCAATCGAAGGTACCCAAA 202 375 358 Antisense
AATGCTATGGCTGGTTTCGATGGAA 236 165 383 Antisense
TGAGGTGTGGATAGACGTTGTCGAG 406 567 423 Antisense
GAGCACGTGCATTGGATGAAGCTGA 632 389 452 Antisense
Sequence Source Affymetrix Proprietary Database