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[184038_at] 7TM chemoreceptor, srw family

Description ZK697.5 /REP_DB=WormBase Gene ID /WP=CE24736 /TR=O44573 /GB=AAC48248.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 02      6grp_cgc > 90      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 20
(-2.3)
A 		23.6
(-2.1)
A 		4.8
(-3)
A 		135.6
(3)
P 		131
B 49.3
(0.5)
A 		9.8
(-3)
A 		30
(-1.2)
A 		77.7
(3)
M 		68
C 6.9
(-3)
A 		37.5
(-1.8)
A 		13.8
(-2.7)
A 		165.8
(3)
P 		159
avr 25.4
(-2.5) 		23.6
(-2.6) 		16.2
(-3) 		126.4
(3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 39.2
(1.6)
A 		4.2
(-3)
A 		31.2
(0.6)
A 		37.1
(1.4)
A 		49.6
(3)
A 		3.9
(-3)
A 		46
B 9.5
(-2.3)
A 		4.2
(-3)
A 		51.2
(3)
A 		36.9
(1.2)
A 		26.3
(-0.2)
A 		43.1
(2)
A 		47
C 35.3
(3)
A 		32.5
(2.5)
A 		15.8
(-0.6)
A 		2.9
(-3)
A 		18.7
(-0.1)
A 		27
(1.5)
A 		32
avr 28
(1.5) 		13.6
(-3) 		32.7
(3) 		25.6
(0.8) 		31.5
(2.6) 		24.7
(0.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 7.3
(-1.1)
A 		5.1
(-1.8)
A 		1.3
(-3)
A 		19.8
(3)
P 		19
B 15.7
(2.6)
A 		2.4
(-3)
A 		6.9
(-1.1)
A 		16.6
(3)
M 		14
C 2.3
(-3)
A 		10.8
(-1)
A 		4.8
(-2.4)
A 		28
(3)
P 		26
avr 8.4
(-1.6) 		6.1
(-2.4) 		4.3
(-3) 		21.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.2
(-0.3)
A 		1.5
(-2.7)
A 		6.8
(-0.5)
A 		9.4
(0.6)
A 		15
(3)
A 		0.9
(-3)
A 		14
B 3.3
(-2.2)
A 		1.4
(-3)
A 		12.4
(1.5)
A 		9.8
(0.4)
A 		10.7
(0.8)
A 		16.1
(3)
A 		15
C 13.1
(3)
A 		9.9
(1.5)
A 		4
(-1.4)
A 		0.6
(-3)
A 		6
(-0.4)
A 		9
(1)
A 		13
avr 7.9
(0.4) 		4.3
(-3) 		7.7
(0.2) 		6.6
(-0.8) 		10.6
(3) 		8.7
(1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15719
Sequence Type Exemplar sequence
Representative Public ID ZK697.5 NCBI
Target Description ZK697.5 /REP_DB=WormBase Gene ID /WP=CE24736 /TR=O44573 /GB=AAC48248.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029146 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-101) (srw-101) mRNA, complete cds. 11/11 None
ZK697.13 ENSEMBL cdna:known chromosome:CEL140:V:1722240:1725090:1 gene:ZK697.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036776 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1717071-1725090(+) 99.66 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-101
Ensembl ZK697.13
Entrez Gene 3565911 Entrez gene
SwissProt Q7Z2B1 EMBL-EBI
WormBase CE34149 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP40513 Serpentine receptor, class w protein 101 [Caenorhabditis elegans] ref|NP_001024317.1| Serpentine Receptor, class W family member (srw-101) [Caenorhabditis elegans] 0.0
blast CAE62450 Hypothetical protein CBG06542 [Caenorhabditis briggsae] 6.0E-95
blast CAE56995 Hypothetical protein CBG24862 [Caenorhabditis briggsae] 1.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024317.1 7 25-47,54-76,108-130,146-168,217-239,267-289,309-331
ZK697.13 7 25-47,54-76,108-130,146-168,217-239,267-289,309-331
Sequence
Target Sequence 
>C. ELEGANS:184038_AT
ttgtcaccaaattgcgccgaacaccaggatattcatggcgtcttcagattttccttaatt
ttgcgtccggtttctactgttgccgacgtagtaattttgagaagttattttatttcagat
tctataatctccagtcttatccctggaatttcctttccattattagcagttgtgttaatt
agagaaattcgaaaacttgaaaaatccagaacgagagctattcggactttatcaactgca
gaaaatgaggaaaaatatggactctctaccaaactaatcggactgatgacagtggctgcg
tttttatcggaaacaccattgggccgacttttaactgatctcgtcatctacttcacgatc
ctagcaactttcgtctcgatacttcacccagttttgtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCACCAAATTGCGCCGAACACC 34 709 2164 Antisense
TCATGGCGTCTTCAGATTTTCCTTA 228 623 2196 Antisense
TCCGGTTTCTACTGTTGCCGACGTA 597 261 2229 Antisense
CAGTCTTATCCCTGGAATTTCCTTT 509 203 2295 Antisense
GAGCTATTCGGACTTTATCAACTGC 43 389 2378 Antisense
GGACTCTCTACCAAACTAATCGGAC 409 517 2422 Antisense
GACAGTGGCTGCGTTTTTATCGGAA 188 369 2451 Antisense
ACCATTGGGCCGACTTTTAACTGAT 603 85 2478 Antisense
TAACTGATCTCGTCATCTACTTCAC 214 639 2495 Antisense
ATCCTAGCAACTTTCGTCTCGATAC 462 39 2521 Antisense
TCGATACTTCACCCAGTTTTGTGCC 276 601 2539 Antisense
Sequence Source Affymetrix Proprietary Database