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[184037_at]

Description C46F9.1 /REP_DB=WormBase Gene ID /WP=CE08768 /TR=O17192 /GB=AAB70957.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 61      6grp_total > 63      4grp_total > 09      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 18.5
(-3)
A 		48.3
(-1.4)
A 		41.6
(-1.7)
A 		128.5
(3)
P 		110
B 41.1
(-2.6)
M 		48
(-2.1)
M 		35.2
(-3)
A 		122.5
(3)
P 		87
C 48.5
(-3)
A 		59.2
(-2.4)
M 		80
(-1.3)
P 		160.8
(3)
P 		112
avr 36
(-3) 		51.8
(-2.1) 		52.3
(-2) 		137.3
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 27.8
(-3)
A 		45.7
(-1.9)
A 		128.6
(3)
P 		86.2
(0.5)
P 		80.5
(0.1)
P 		49.9
(-1.7)
P 		101
B 62.6
(-2.2)
P 		54.7
(-3)
P 		115
(2.8)
P 		117.4
(3)
P 		67.9
(-1.7)
P 		60.1
(-2.5)
M 		63
C 25.8
(-3)
A 		37.6
(-2.3)
A 		85.4
(0.6)
P 		124.4
(3)
P 		60.5
(-0.9)
P 		47.4
(-1.7)
P 		99
avr 38.7
(-3) 		46
(-2.4) 		109.7
(3) 		109.3
(3) 		69.6
(-0.4) 		52.5
(-1.8) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 6.7
(-3)
A 		10.5
(-1.1)
A 		10.9
(-0.9)
A 		18.8
(3)
P 		12
B 13.1
(-1.3)
M 		11.8
(-1.8)
M 		8.1
(-3)
A 		26.1
(3)
P 		18
C 16
(-3)
A 		17
(-2.5)
M 		27.9
(3)
P 		27.1
(2.6)
P 		12
avr 11.9
(-3) 		13.1
(-2.4) 		15.6
(-1.2) 		24
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.1
(-3)
A 		16.3
(-0.1)
A 		28
(3)
P 		21.9
(1.4)
P 		24.3
(2)
P 		12.1
(-1.2)
P 		23
B 21.8
(-1.3)
P 		18.2
(-3)
P 		27.9
(1.5)
P 		31.1
(3)
P 		27.6
(1.4)
P 		22.4
(-1)
M 		13
C 9.6
(-3)
A 		11.5
(-2.3)
A 		21.7
(1.7)
P 		25
(3)
P 		19.6
(0.9)
P 		15.9
(-0.5)
P 		15
avr 12.2
(-3) 		15.3
(-1.7) 		25.9
(3) 		26
(3) 		23.8
(2) 		16.8
(-1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4514
Sequence Type Exemplar sequence
Representative Public ID C46F9.1 NCBI
Target Description C46F9.1 /REP_DB=WormBase Gene ID /WP=CE08768 /TR=O17192 /GB=AAB70957.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061717
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005716 ENSEMBL cdna:SNAP chromosome:CEL140:II:1907547:1907777:1 None
GENEFINDER00000005733 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1907547:1907777:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1905429-1907776(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 5.0E-32
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-31
blast AAC26265 Hypothetical protein C40D2.2 [Caenorhabditis elegans] ref|NP_494146.1| C40D2.2 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:184037_AT
gcttgtcagacacgtcgggaaagatacaattttattaggtggaacgatatggagaaagat
tatgtgaccaatgacagtatcgatgtggaaattcgtgtgaaaataatcaatatcacagat
gcaccatgcaatattgcaaacacggaaaaaacgtttgtactatcccatactgtcaagaac
atgtcaagtattaaagaaggagggaactactttacaaacattcaaactcgcttcaatatt
ccatggaaattgcaaattcgaaagcaaaaagggttttttggattatatcttctatgcgag
aaacaactatgtgaatccagaaaatggtcaattgaaactgaatctcaactgaaaatagtg
tcacccaatgggagaagtttactgtttggaggaacagatatgtttgaaaaaccattcggc
tacggatggactaagctcatgagatgggacaatttggaagaaaaatacatagtcgacgat
gctcttgttattgaagctcacgtaaaaattctaaatatgattggaattgaggatgaaacc
cctgttgagaaacctactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGTCAGACACGTCGGGAAAGAT 637 303 535 Antisense
TCAATATCACAGATGCACCATGCAA 329 633 641 Antisense
GAGGGAACTACTTTACAAACATTCA 131 393 734 Antisense
TACTTTACAAACATTCAAACTCGCT 696 633 742 Antisense
TTTGGATTATATCTTCTATGCGAGA 318 667 811 Antisense
GCGAGAAACAACTATGTGAATCCAG 631 287 830 Antisense
TTCGGCTACGGATGGACTAAGCTCA 661 687 949 Antisense
GGACTAAGCTCATGAGATGGGACAA 201 523 962 Antisense
CATAGTCGACGATGCTCTTGTTATT 463 213 1002 Antisense
CGATGCTCTTGTTATTGAAGCTCAC 490 249 1011 Antisense
GAAACCCCTGTTGAGAAACCTACTG 630 343 1069 Antisense
Sequence Source Affymetrix Proprietary Database