[Home] | [Total List]

[184036_at]

Description F40H7.3 /REP_DB=WormBase Gene ID /WP=CE10202 /TR=O17090 /GB=AAF39803.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 35      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 10.9
(-2.2)
A 		62.8
(3)
A 		2.5
(-3)
A 		48.9
(1.6)
A 		60
B 2.2
(-3)
A 		18.9
(3)
A 		4.7
(-2.1)
A 		6.2
(-1.6)
A 		17
C 17.2
(-0.6)
A 		37.9
(3)
A 		4.9
(-2.8)
A 		3.5
(-3)
A 		34
avr 10.1
(-2) 		39.9
(3) 		4
(-3) 		19.5
(-0.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 43.8
(2.8)
A 		4.7
(-3)
A 		44.9
(3)
A 		8.6
(-2.4)
A 		27.3
(0.4)
A 		17.7
(-1.1)
A 		40
B 3.9
(-3)
A 		11.6
(-1.9)
A 		45.9
(3)
A 		11.2
(-2)
A 		14.8
(-1.4)
A 		20.3
(-0.7)
A 		42
C 11.9
(-1.3)
A 		27.7
(2.3)
A 		30.9
(3)
A 		15.2
(-0.6)
A 		4.6
(-3)
A 		25.4
(1.7)
A 		26
avr 19.9
(-1.3) 		14.7
(-2.4) 		40.6
(3) 		11.7
(-3) 		15.6
(-2.2) 		21.1
(-1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4
(-1.5)
A 		13.6
(3)
A 		0.7
(-3)
A 		7.2
(0)
A 		13
B 0.7
(-3)
A 		4.7
(3)
A 		1.1
(-2.4)
A 		1.3
(-2.1)
A 		4
C 5.7
(-0)
A 		10.9
(3)
A 		1.7
(-2.4)
A 		0.6
(-3)
A 		10
avr 3.5
(-1.4) 		9.7
(3) 		1.2
(-3) 		3
(-1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 8.1
(1.7)
A 		1.7
(-3)
A 		9.8
(3)
A 		2.2
(-2.6)
A 		8.2
(1.8)
A 		4.3
(-1.1)
A 		8
B 1.4
(-3)
A 		3.9
(-1.5)
A 		11.1
(3)
A 		3
(-2)
A 		6
(-0.2)
A 		7.6
(0.8)
A 		10
C 4.4
(-0.5)
A 		8.5
(3)
A 		7.9
(2.5)
A 		3.1
(-1.6)
A 		1.5
(-3)
A 		8.5
(3)
A 		7
avr 4.6
(-1.4) 		4.7
(-1.3) 		9.6
(3) 		2.8
(-3) 		5.2
(-0.9) 		6.8
(0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4193
Sequence Type Exemplar sequence
Representative Public ID F40H7.3 NCBI
Target Description F40H7.3 /REP_DB=WormBase Gene ID /WP=CE10202 /TR=O17090 /GB=AAF39803.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F40H7.3 ENSEMBL cdna:pseudogene chromosome:CEL140:II:3691778:3693225:1 gene:F40H7.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031701 7/11 Cross Hyb Matching Probes None
GENEFINDER00000031713 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3691776-3693224(+) 100.0 100.0
Public Domain and Genome References
Ensembl F40H7.3
Sequence
Target Sequence 
>C. ELEGANS:184036_AT
tgatggtcaatgaagcggtcagctatggaatttatttcctgggcccggttactcaattca
tgatttctattgatagaatgctagtgatagtatatgcaaaacaatttattaatcggaata
atcaaaaactaacaattatcatcctccttatcctctggttggttgcagttgccaatctga
ttatatcagcagtaacagatgggtgcgatgtgatctacaacccggagcttctcaactgta
gcacttgtcccctctgttgtgcagttctttcaaatctcactaaccttattgtggttctga
aattggcaatttcaatgaaaacaacgcatataaattcgaactcagtacgccggagacaac
gcaaatctcgaaaactattcattcaaagttgtattcaagactggttatttgctattgata
gtattaatagcacatttgtggatggaatttctgatggaattattttcaaatttatgcttg
atgttttctctaatctaatgacccttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGGTCAATGAAGCGGTCAGCTA 84 567 308 Antisense
TATGGAATTTATTTCCTGGGCCCGG 524 651 331 Antisense
CTAACAATTATCATCCTCCTTATCC 261 227 436 Antisense
CTCCTTATCCTCTGGTTGGTTGCAG 334 233 451 Antisense
GGTTGCAGTTGCCAATCTGATTATA 616 507 468 Antisense
GAGCTTCTCAACTGTAGCACTTGTC 321 389 532 Antisense
CCCTCTGTTGTGCAGTTCTTTCAAA 682 259 557 Antisense
TTCTTTCAAATCTCACTAACCTTAT 554 673 572 Antisense
ATAAATTCGAACTCAGTACGCCGGA 69 1 637 Antisense
AGTACGCCGGAGACAACGCAAATCT 432 59 651 Antisense
GTTTTCTCTAATCTAATGACCCTTG 521 447 790 Antisense
Sequence Source Affymetrix Proprietary Database