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[184035_at]

Description M02F4.7 /REP_DB=WormBase Gene ID /WP=CE04768 /TR=Q21471 /GB=AAA83203.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      6grp_highest_nonorm > 35      6grp_total > 41      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6420
1 2 3 4 range
A 6425
(3)
P 		6213.8
(2.8)
P 		6219.4
(2.8)
P 		8.5
(-3)
A 		6417
B 5446.6
(2.1)
P 		5765.8
(2.4)
P 		6423.9
(3)
P 		65
(-3)
A 		6359
C 6108.1
(3)
P 		5552.5
(2.5)
P 		5994.9
(2.9)
P 		5.4
(-3)
A 		6103
avr 5993.2
(2.8) 		5844
(2.6) 		6212.7
(3) 		26.3
(-3) 		6186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4927
1 2 3 4 5 6 range
A 2882.2
(-0.2)
P 		3504.8
(0.5)
P 		5521.5
(3)
P 		4866.7
(2.2)
P 		2426.5
(-0.8)
P 		594.1
(-3)
P 		4927
B 3203.2
(0.5)
P 		3495.2
(0.9)
P 		4835.7
(2.8)
P 		4984.7
(3)
P 		2620.9
(-0.3)
P 		708.8
(-3)
P 		4276
C 2641.1
(-0.4)
P 		3340.7
(0.5)
P 		5220.3
(3)
P 		4776.4
(2.4)
P 		2493.4
(-0.6)
P 		687.3
(-3)
P 		4533
avr 2908.8
(-0) 		3446.9
(0.7) 		5192.5
(3) 		4875.9
(2.6) 		2513.6
(-0.5) 		663.4
(-3) 		4529
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2338
1 2 3 4 range
A 2339.3
(3)
P 		1348.9
(0.5)
P 		1625.9
(1.2)
P 		1.2
(-3)
A 		2338
B 1736.9
(3)
P 		1424
(1.9)
P 		1488.6
(2.1)
P 		13.9
(-3)
A 		1723
C 2021.9
(2.8)
P 		1596.4
(1.6)
P 		2089.4
(3)
P 		0.9
(-3)
A 		2089
avr 2032.7
(3) 		1456.4
(1.3) 		1734.6
(2.1) 		5.3
(-3) 		2027

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1184
1 2 3 4 5 6 range
A 531.3
(-0.9)
P 		1246.5
(3)
P 		1202.5
(2.8)
P 		1234.3
(2.9)
P 		732.2
(0.2)
P 		144.7
(-3)
P 		1102
B 1114.5
(1.8)
P 		1163.4
(2.1)
P 		1174.2
(2.2)
P 		1320.3
(3)
P 		1064.8
(1.5)
P 		264.3
(-3)
P 		1056
C 979
(1.1)
P 		1019.4
(1.3)
P 		1328.7
(3)
P 		960.5
(1)
P 		806.8
(0.1)
P 		230.1
(-3)
P 		1099
avr 874.9
(0.9) 		1143.1
(2.5) 		1235.1
(3) 		1171.7
(2.6) 		867.9
(0.8) 		213
(-3) 		1022
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18144
Sequence Type Exemplar sequence
Representative Public ID M02F4.7 NCBI
Target Description M02F4.7 /REP_DB=WormBase Gene ID /WP=CE04768 /TR=Q21471 /GB=AAA83203.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076117(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076117 NCBI Caenorhabditis elegans M02F4.7 (M02F4.7) mRNA, complete cds. 11/11 None
SNAP00000027799 ENSEMBL cdna:SNAP chromosome:CEL140:X:3031787:3033058:1 11/11 None
GENEFINDER00000027807 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3031787:3033058:1 11/11 None
M02F4.7 ENSEMBL cdna:known chromosome:CEL140:X:3031771:3033194:1 gene:M02F4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3031786-3033058(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02F4.7
Entrez Gene 180590 Entrez gene
SwissProt Q21471 EMBL-EBI
WormBase CE04768 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83203 Hypothetical protein M02F4.7 [Caenorhabditis elegans] ref|NP_508518.1| M02F4.7 [Caenorhabditis elegans] 0.0
blast CAE68365 Hypothetical protein CBG14118 [Caenorhabditis briggsae] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.1E-4
Pfam IPR001304 EMBL-EBI C-type lectin 9.1E-7
Sequence
Target Sequence 
>C. ELEGANS:184035_AT
ggatactggtatgctcagccatgcccagattctcacagtgtactgtgcgaatttgacctt
gtgccaccaaccccgaaaccagtgctcaccacaactgtaaaaccaagtggatttccgagc
tgtgttcaaaagtatttgaactttgttccatgccaatccggatgggagtactatccacca
acatgtgcttgtttcaagattatttccaacactacctattataatgctatgaacacttgt
agaagcatgggaggaacactggcttctgttcataatgcaggagaagctgctttcattaac
cgtcttggagtccaagcgaattcatattgggtttctaccgcgacagctagagacaacatt
attattgggctaacttataactcggaccgtggatacttccaatgggatgactctactgtt
tttgactatgctcagggattcgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACTGGTATGCTCAGCCATGCC 271 511 400 Antisense
ATGCCCAGATTCTCACAGTGTACTG 201 39 420 Antisense
TGTGCGAATTTGACCTTGTGCCACC 3 557 443 Antisense
AAGTGGATTTCCGAGCTGTGTTCAA 371 159 504 Antisense
GTACTATCCACCAACATGTGCTTGT 449 459 567 Antisense
GATTATTTCCAACACTACCTATTAT 504 429 597 Antisense
GAAGCTGCTTTCATTAACCGTCTTG 511 343 682 Antisense
CATATTGGGTTTCTACCGCGACAGC 335 215 722 Antisense
GGCTAACTTATAACTCGGACCGTGG 452 499 767 Antisense
GGGATGACTCTACTGTTTTTGACTA 32 497 803 Antisense
TGACTATGCTCAGGGATTCGCTCCA 382 571 822 Antisense
Sequence Source Affymetrix Proprietary Database