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[184034_at]

Description H12C20.5 /REP_DB=WormBase Gene ID /WP=CE18810 /TR=Q9XXM6 /GB=CAA18353.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 03      6grp_cgc > 87      6grp_cgc_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 14.1
(-1.2)
A 		2.7
(-3)
A 		3.3
(-2.9)
A 		40.1
(3)
A 		37
B 2.8
(-1.2)
A 		1.9
(-3)
A 		1.9
(-3)
A 		4.9
(3)
A 		3
C 5.6
(-2.7)
A 		2.9
(-2.9)
A 		1.5
(-3)
A 		73.2
(3)
M 		72
avr 7.5
(-2.1) 		2.5
(-3) 		2.2
(-3) 		39.4
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.9
(-3)
A 		3.9
(-2.4)
A 		4.4
(-2.3)
A 		4.4
(-2.3)
A 		22.8
(3)
A 		3.2
(-2.6)
A 		21
B 3.6
(-2.1)
A 		5.8
(-1.2)
A 		1.6
(-3)
A 		15.3
(3)
A 		2.5
(-2.6)
A 		3.2
(-2.3)
A 		14
C 0.7
(-3)
A 		2.3
(3)
A 		1.2
(-1.1)
A 		1.4
(-0.4)
A 		0.8
(-2.6)
A 		1.6
(0.4)
A 		2
avr 2.1
(-3) 		4
(-1.3) 		2.4
(-2.7) 		7
(1.5) 		8.7
(3) 		2.7
(-2.5) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.1
(2.1)
A 		0.6
(-3)
A 		0.9
(-2.7)
A 		5.9
(3)
A 		5
B 0.9
(1.3)
A 		0.5
(-2.1)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
C 1.9
(-2.3)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		12.3
(3)
M 		12
avr 2.6
(-0.9) 		0.6
(-3) 		0.6
(-3) 		6.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.4
(-2.1)
A 		0.9
(-2.5)
A 		1.1
(-2.4)
A 		6.9
(3)
A 		0.8
(-2.6)
A 		7
B 1.3
(-1.5)
A 		1.9
(-0.5)
A 		0.4
(-3)
A 		4
(3)
A 		1
(-2)
A 		1.2
(-1.7)
A 		4
C 0.3
(-3)
A 		0.7
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.5
(0)
A 		0
avr 0.7
(-2.5) 		1.3
(-0.8) 		0.5
(-3) 		1.8
(0.5) 		2.7
(3) 		0.8
(-2.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13160
Sequence Type Exemplar sequence
Representative Public ID H12C20.5 NCBI
Target Description H12C20.5 /REP_DB=WormBase Gene ID /WP=CE18810 /TR=Q9XXM6 /GB=CAA18353.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073537 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-90) (srx-90) mRNA, complete cds. 11/11 None
GENEFINDER00000002554 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11583715:11585047:1 11/11 None
H12C20.5 ENSEMBL cdna:known chromosome:CEL140:V:11583715:11585047:1 gene:H12C20.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11583714-11585047(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srx-90
Ensembl H12C20.5
Entrez Gene 186725 Entrez gene
SwissProt Q9XXM6 EMBL-EBI
WormBase CE18810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18353 Hypothetical protein H12C20.5 [Caenorhabditis elegans] ref|NP_505938.1| Serpentine Receptor, class X family member (srx-90) [Caenorhabditis elegans] 0.0
blast AAC17662 Serpentine receptor, class x protein 93 [Caenorhabditis elegans] ref|NP_504016.2| Serpentine Receptor, class X family member (srx-93) [Caenorhabditis elegans] 1.0E-139
blast NP_001023783 Serpentine Receptor, class X family member (srx-92) [Caenorhabditis elegans] gb|AAX22289.1| Serpentine receptor, class x protein 92, isoform b [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 8.5E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505938.1 7 15-37,50-72,87-109,121-143,188-207,228-247,262-284
H12C20.5 7 15-37,50-72,87-109,121-143,188-207,228-247,262-284
GENEFINDER00000002554 7 15-37,50-72,87-109,121-143,188-207,228-247,262-284
Sequence
Target Sequence 
>C. ELEGANS:184034_AT
tatgaactcttacccgagtcagcaaaagggtgtcatgcactttactcgactgaagctctt
gcttggtattacagcactgcaccagaatgtacttgggttgataacgctctagaagtgata
aaatatactttcatgtcgatggcttttttgaattgtatcacttttcttaagatcttacat
ttttacagaaaatccagaaagacacaagaagccgttgaagtgaagaagagatggcgaaaa
aatatcgcgttatttttacaaacaattcttcaagattccctttactttattgatatgact
tttacatttgaattaagttccttgagcactaatcgcgtatggacgtatttcagtggaact
tttatttgggaatgcctacattcttttgatggtttcattatggtattgttcaacgagaaa
gtgtcatttttcaaaagtaaatcaaaaaatacaactgtacatccaacaattgtcggtgaa
cggacacggcatggacctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGAACTCTTACCCGAGTCAGCAA 543 655 451 Antisense
AAGGGTGTCATGCACTTTACTCGAC 602 159 476 Antisense
TTTACTCGACTGAAGCTCTTGCTTG 350 673 491 Antisense
GCTTGGTATTACAGCACTGCACCAG 309 307 511 Antisense
GCACTGCACCAGAATGTACTTGGGT 538 315 524 Antisense
GTACTTGGGTTGATAACGCTCTAGA 223 459 539 Antisense
TATACTTTCATGTCGATGGCTTTTT 296 661 574 Antisense
TTCTTCAAGATTCCCTTTACTTTAT 465 689 716 Antisense
GTTCCTTGAGCACTAATCGCGTATG 479 441 767 Antisense
GTACATCCAACAATTGTCGGTGAAC 293 461 907 Antisense
TGAACGGACACGGCATGGACCTGTC 405 573 927 Antisense
Sequence Source Affymetrix Proprietary Database