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[184032_at]

Description C43H6.7 /REP_DB=WormBase Gene ID /WP=CE06958 /TR=Q18585 /GB=AAA96084.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 59      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 244
(1.9)
P 		152.1
(-2)
A 		268.6
(3)
M 		129.2
(-3)
A 		139
B 210.6
(-1.7)
P 		296
(3)
P 		223.8
(-1)
M 		187.1
(-3)
A 		109
C 208.1
(-0.4)
P 		251.6
(2.6)
A 		257.8
(3)
P 		170.1
(-3)
A 		88
avr 220.9
(1) 		233.2
(1.8) 		250.1
(3) 		162.1
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 227.6
(1.8)
P 		229.5
(1.9)
P 		215.4
(1.3)
P 		256.5
(3)
P 		178.6
(-0.1)
M 		107.6
(-3)
A 		149
B 243.8
(0.1)
P 		248.9
(0.2)
P 		279.2
(1.1)
P 		343.9
(3)
P 		224.5
(-0.5)
P 		136.8
(-3)
M 		207
C 222.8
(1.1)
P 		235.6
(1.5)
P 		226
(1.2)
P 		273.7
(3)
P 		174.1
(-0.8)
P 		116.4
(-3)
A 		157
avr 231.4
(0.9) 		238
(1.1) 		240.2
(1.2) 		291.4
(3) 		192.4
(-0.5) 		120.3
(-3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 88.9
(3)
P 		33
(-1.8)
A 		70.2
(1.4)
M 		18.9
(-3)
A 		70
B 67.2
(1.9)
P 		73.1
(3)
P 		51.8
(-0.8)
M 		39.9
(-3)
A 		33
C 68.9
(0.9)
P 		72.3
(1.3)
A 		89.8
(3)
P 		28.7
(-3)
A 		61
avr 75
(3) 		59.5
(1) 		70.6
(2.4) 		29.2
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 42
(-1.3)
P 		81.6
(3)
P 		46.9
(-0.8)
P 		65
(1.2)
P 		53.9
(0)
M 		26.2
(-3)
A 		55
B 84.8
(2)
P 		82.8
(1.7)
P 		67.8
(-0.5)
P 		91.1
(3)
P 		91.2
(3)
P 		51
(-3)
M 		40
C 82.6
(3)
P 		71.9
(1.5)
P 		57.5
(-0.5)
P 		55
(-0.8)
P 		56.3
(-0.6)
P 		39
(-3)
A 		44
avr 69.8
(1.7) 		78.8
(3) 		57.4
(-0.2) 		70.4
(1.7) 		67.1
(1.2) 		38.7
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18401
Sequence Type Exemplar sequence
Representative Public ID C43H6.7 NCBI
Target Description C43H6.7 /REP_DB=WormBase Gene ID /WP=CE06958 /TR=Q18585 /GB=AAA96084.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076034 NCBI Caenorhabditis elegans C43H6.7 (C43H6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000018908 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2398965:2401858:-1 11/11 None
C43H6.7 ENSEMBL cdna:known chromosome:CEL140:X:2398965:2401858:-1 gene:C43H6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018901 2/11 Cross Hyb Matching Probes None
SNAP00000018902 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2398964-2401858(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H6.7
Entrez Gene 183426 Entrez gene
SwissProt Q18585 EMBL-EBI
WormBase CE06958 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600302_AT similar to Abl-philin 2 cfa
CANINE_2:CFAAFFX.14351.1.S1_AT similar to Abl-philin 2 cfa
CANINE_2:CFAAFFX.14351.1.S1_S_AT similar to Abl-philin 2 cfa
DROSOPHILA_2:1639092_AT dm
DROSGENOME1:153288_AT dm
CHICKEN:GGAAFFX.4737.1.S1_AT similar to Abl-philin 2 gga
CHICKEN:GGAAFFX.4737.2.S1_S_AT similar to Abl-philin 2 gga
CHICKEN:GGAAFFX.4737.3.S1_S_AT similar to Abl-philin 2 gga
HG-U133_PLUS_2:223212_AT zinc finger, DHHC-type containing 16 hs
HG-U133B:223212_AT zinc finger, DHHC-type containing 16 hs
HU35KSUBC:RC_AA609132_AT zinc finger, DHHC-type containing 16 hs
U133_X3P:G13528668_3P_AT zinc finger, DHHC-type containing 16 hs
HG-U95B:43365_S_AT zinc finger, DHHC-type containing 16 hs
HG-U95B:54920_AT zinc finger, DHHC-type containing 16 hs
HG-U95D:75681_AT Zinc finger, DHHC-type containing 16 hs
HU35KSUBC:RC_T65941_AT Zinc finger, DHHC-type containing 16 hs
MOUSE430_2:1421115_A_AT zinc finger, DHHC domain containing 16 mm
MOUSE430A_2:1421115_A_AT zinc finger, DHHC domain containing 16 mm
MOE430A:1421115_A_AT zinc finger, DHHC domain containing 16 mm
MG-U74AV2:103643_AT zinc finger, DHHC domain containing 16 mm
MG-U74CV2:170666_I_AT zinc finger, DHHC domain containing 16 mm
MG-U74CV2:134536_AT Zinc finger, DHHC domain containing 16, mRNA (cDNA clone MGC:19358 IMAGE:4239913) mm
MOUSE430_2:1458646_AT Zinc finger, DHHC domain containing 16, mRNA (cDNA clone MGC:19358 IMAGE:4239913) mm
MOE430B:1458646_AT Zinc finger, DHHC domain containing 16, mRNA (cDNA clone MGC:19358 IMAGE:4239913) mm
MU11KSUBA:C81176_RC_AT Zinc finger, DHHC domain containing 16, mRNA (cDNA clone MGC:19358 IMAGE:4239913) mm
MU19KSUBA:TC20126_AT Zinc finger, DHHC domain containing 16, mRNA (cDNA clone MGC:19358 IMAGE:4239913) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96084 Hypothetical protein C43H6.7 [Caenorhabditis elegans] ref|NP_508435.1| C43H6.7 [Caenorhabditis elegans] 1.0E-163
blast CAE58883 Hypothetical protein CBG02116 [Caenorhabditis briggsae] 1.0E-133
blast EAA09699 ENSANGP00000013082 [Anopheles gambiae str. PEST] ref|XP_314335.2| ENSANGP00000013082 [Anopheles gambiae str. PEST] 2.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 1.3E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508435.1 4 32-54,64-81,148-170,210-232
C43H6.7 4 32-54,64-81,148-170,210-232
GENEFINDER00000018908 4 32-54,64-81,148-170,210-232
Sequence
Target Sequence 
>C. ELEGANS:184032_AT
ggcgattcattttgctccaagtgcaattactggaaaagcgataacgctcatcactgctcc
gtgtgcgagaaatgtgtacttgggatggatcaccactgtatttggatcaaccagtgtgtt
gggttacacaaccatcgccatttctttctattcattgcaaatttgacacttgcggcggcc
acaatcattatagccggatatcagtcgttttccgatcatttgttcttagagtcttctcaa
acaacatattgcacgacaatactagaacatgcaccacttcaggacattatttgcgattat
gacggttttgctcgaacgtcagttgtgttctgttacttgctgagtggcattcttctggtg
atggttggcggtctgacttcatggaatatttatctgatttcaatcggatgcacttacatt
gattacttaaaactgacgggatctaagaaaaacacgagcgccagaaaacgactgaataaa
ggattcaaagcaaactggaggaatttcttaggattacgaagaaaccgaacattcttcaaa
tgtgtcattatgccaactgctttaccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGATTCATTTTGCTCCAAGTGCA 303 541 313 Antisense
CATCACTGCTCCGTGTGCGAGAAAT 73 213 361 Antisense
GTGTTGGGTTACACAACCATCGCCA 472 485 428 Antisense
GCCATTTCTTTCTATTCATTGCAAA 493 281 449 Antisense
ACACTTGCGGCGGCCACAATCATTA 297 109 478 Antisense
GTCGTTTTCCGATCATTTGTTCTTA 504 473 516 Antisense
GAACATGCACCACTTCAGGACATTA 498 349 577 Antisense
GGTTTTGCTCGAACGTCAGTTGTGT 200 505 616 Antisense
GTTGTGTTCTGTTACTTGCTGAGTG 265 437 634 Antisense
ATGGTTGGCGGTCTGACTTCATGGA 528 43 673 Antisense
TCATTATGCCAACTGCTTTACCGCC 420 619 857 Antisense
Sequence Source Affymetrix Proprietary Database