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[184031_at]

Description F36A4.2 /REP_DB=WormBase Gene ID /WP=CE07178 /TR=Q20095 /GB=AAA96163.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 3
(-3)
A 		6.4
(-2.7)
A 		4.9
(-2.8)
A 		69.4
(3)
A 		66
B 29.8
(3)
A 		6.9
(-2.2)
A 		3.4
(-3)
A 		29.9
(3)
A 		27
C 2.5
(-3)
A 		7.5
(-2.7)
A 		8
(-2.7)
A 		113
(3)
A 		111
avr 11.8
(-2.4) 		6.9
(-2.9) 		5.4
(-3) 		70.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 9.7
(-2.7)
A 		1.5
(-3)
A 		6.3
(-2.8)
A 		59.9
(-0.9)
A 		126.1
(1.5)
M 		166.4
(3)
P 		165
B 6.1
(-2.9)
A 		4.6
(-3)
A 		22.3
(-2.3)
A 		15.9
(-2.6)
A 		159.9
(3)
P 		142.7
(2.3)
P 		155
C 5.5
(-2.9)
A 		4
(-3)
A 		26.9
(-2.2)
A 		25.6
(-2.2)
A 		103
(0.5)
P 		174.6
(3)
P 		171
avr 7.1
(-2.9) 		3.4
(-3) 		18.5
(-2.4) 		33.8
(-1.8) 		129.7
(1.8) 		161.2
(3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.1
(-3)
A 		1.4
(-2.8)
A 		1.3
(-2.9)
A 		10.2
(3)
A 		9
B 9.5
(3)
A 		1.7
(-2.4)
A 		0.8
(-3)
A 		6.4
(0.9)
A 		9
C 0.8
(-3)
A 		2.2
(-2.5)
A 		2.8
(-2.3)
A 		19
(3)
A 		18
avr 3.8
(-1.7) 		1.8
(-2.9) 		1.6
(-3) 		11.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 1.8
(-2.8)
A 		0.5
(-3)
A 		1.4
(-2.9)
A 		15.2
(-0.8)
A 		38
(2.6)
M 		40.5
(3)
P 		40
B 2.1
(-2.9)
A 		1.5
(-3)
A 		5.4
(-2.6)
A 		4.2
(-2.7)
A 		65
(3)
P 		53.2
(1.9)
P 		64
C 2
(-2.9)
A 		1.2
(-3)
A 		6.9
(-2.4)
A 		5.2
(-2.6)
A 		33.3
(0.4)
P 		58.5
(3)
P 		57
avr 2
(-2.9) 		1.1
(-3) 		4.6
(-2.6) 		8.2
(-2.1) 		45.4
(2.4) 		50.7
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11125
Sequence Type Exemplar sequence
Representative Public ID F36A4.2 NCBI
Target Description F36A4.2 /REP_DB=WormBase Gene ID /WP=CE07178 /TR=Q20095 /GB=AAA96163.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068127 NCBI Caenorhabditis elegans F36A4.2 (F36A4.2) mRNA, complete cds. 11/11 None
SNAP00000033270 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4271245:4271779:1 11/11 None
GENEFINDER00000033280 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4271245:4272768:1 11/11 None
F36A4.2 ENSEMBL cdna:known chromosome:CEL140:IV:4271245:4271779:1 gene:F36A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4271250-4271785(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A4.2
Entrez Gene 185339 Entrez gene
SwissProt Q20095 EMBL-EBI
WormBase CE07178 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96163 Hypothetical protein F36A4.2 [Caenorhabditis elegans] ref|NP_500528.1| F36A4.2 [Caenorhabditis elegans] 3.0E-85
blast AAA96163 Hypothetical protein F36A4.2 [Caenorhabditis elegans] ref|NP_500528.1| F36A4.2 [Caenorhabditis elegans] 9.0E-76
blast AAA96164 Hypothetical protein F36A4.1 [Caenorhabditis elegans] ref|NP_500529.1| F36A4.1 [Caenorhabditis elegans] 5.0E-40
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 1.0E-36
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 6.0E-35
blast AAA96162 Hypothetical protein F36A4.3 [Caenorhabditis elegans] ref|NP_500527.1| F36A4.3 [Caenorhabditis elegans] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 2.0E-80
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 1.6E-75
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 2.1E-27
Sequence
Target Sequence 
>C. ELEGANS:184031_AT
atgcatctgcctacaatttgcctagtcattctatgctctctagccagtggacaggttctc
tttcaagctaaagtcacctgcaatattggcacatactggtgtggagaactctatatattg
gaggaagattggctgtttcacgatcagttggctcatgacaaattctgcacatcggatatg
tataaacaacttgattacacagtcaatcctaaagactttcctacaatggactacgagatc
ttttacaaattcaatcataattgtactgcggacggaaaaacgtattgtgtgcaacctaaa
gaatcgaaaaaagttcataaatgggttggacatcgccgcgttaaattcctcatcgatgct
agcgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATCTGCCTACAATTTGCCTAG 543 43 13 Antisense
ATTTGCCTAGTCATTCTATGCTCTC 610 17 28 Antisense
TATGCTCTCTAGCCAGTGGACAGGT 616 657 44 Antisense
AGTGGACAGGTTCTCTTTCAAGCTA 472 57 58 Antisense
GTCACCTGCAATATTGGCACATACT 2 467 85 Antisense
GAGGAAGATTGGCTGTTTCACGATC 661 403 133 Antisense
GTTTCACGATCAGTTGGCTCATGAC 17 451 147 Antisense
GGCTCATGACAAATTCTGCACATCG 140 539 162 Antisense
AAGACTTTCCTACAATGGACTACGA 300 151 224 Antisense
GGACATCGCCGCGTTAAATTCCTCA 368 525 340 Antisense
AAATTCCTCATCGATGCTAGCGCAA 362 115 355 Antisense
Sequence Source Affymetrix Proprietary Database