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[184030_at]

Description W06H8.6 /REP_DB=WormBase Gene ID /WP=CE25151 /TR=Q9N5B5 /GB=AAF39983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 44      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 83.3
(1.1)
A 		110.8
(3)
A 		82.6
(1)
A 		25.1
(-3)
A 		86
B 123.8
(3)
M 		121
(2.6)
A 		112.5
(1.6)
A 		76.8
(-3)
A 		47
C 96.2
(-1.1)
A 		160
(3)
A 		67.2
(-3)
A 		92.1
(-1.4)
A 		93
avr 101.1
(0.3) 		130.6
(3) 		87.4
(-0.9) 		64.7
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 87.9
(3)
A 		28.6
(-1.9)
A 		79.3
(2.3)
A 		52.1
(0)
A 		60.5
(0.7)
A 		15.6
(-3)
A 		72
B 86.2
(2.3)
A 		93.4
(3)
A 		34.4
(-3)
A 		76.6
(1.3)
A 		57
(-0.7)
A 		62.1
(-0.2)
A 		59
C 63.3
(-0.3)
A 		103.3
(3)
A 		87.1
(1.6)
A 		31.6
(-3)
A 		49.6
(-1.5)
A 		31.8
(-3)
A 		72
avr 79.1
(3) 		75.1
(2.4) 		66.9
(1.3) 		53.4
(-0.6) 		55.7
(-0.3) 		36.5
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 30.3
(3)
A 		24.1
(1.6)
A 		21.6
(1)
A 		3.7
(-3)
A 		27
B 39.5
(3)
M 		29.9
(0.5)
A 		26.1
(-0.5)
A 		16.4
(-3)
A 		23
C 31.8
(0.2)
A 		46
(3)
A 		23.4
(-1.4)
A 		15.5
(-3)
A 		31
avr 33.9
(3) 		33.3
(2.8) 		23.7
(0.2) 		11.9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 16.2
(2.1)
A 		10.2
(-0.4)
A 		17.3
(2.6)
A 		13.2
(0.9)
A 		18.3
(3)
A 		3.8
(-3)
A 		15
B 30
(2.7)
A 		31.1
(3)
A 		8.4
(-3)
A 		20.3
(0.1)
A 		23.2
(0.9)
A 		23.2
(0.9)
A 		23
C 23.5
(1.1)
A 		31.5
(3)
A 		22.2
(0.8)
A 		6.4
(-3)
A 		16.1
(-0.7)
A 		10.7
(-2)
A 		25
avr 23.2
(2.4) 		24.3
(3) 		16
(-1.3) 		13.3
(-2.6) 		19.2
(0.4) 		12.6
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12465
Sequence Type Exemplar sequence
Representative Public ID W06H8.6 NCBI
Target Description W06H8.6 /REP_DB=WormBase Gene ID /WP=CE25151 /TR=Q9N5B5 /GB=AAF39983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072195
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002859 ENSEMBL cdna:SNAP chromosome:CEL140:V:6228408:6229575:-1 None
GENEFINDER00000002861 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6224498:6229575:-1 None
W06H8.6 ENSEMBL cdna:known chromosome:CEL140:V:6226639:6229604:-1 gene:W06H8.6 None
NM_072195 NCBI Caenorhabditis elegans W06H8.6 (W06H8.6) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002858 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6226638-6229575(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06H8.6
Entrez Gene 3564781 Entrez gene
SwissProt Q9N5B5 EMBL-EBI
WormBase CE21264 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39983 Hypothetical protein W06H8.6 [Caenorhabditis elegans] ref|NP_504596.2| W06H8.6 [Caenorhabditis elegans] 1.0E-142
blast CAE71849 Hypothetical protein CBG18891 [Caenorhabditis briggsae] 1.0E-121
blast AAF39983 Hypothetical protein W06H8.6 [Caenorhabditis elegans] ref|NP_504596.2| W06H8.6 [Caenorhabditis elegans] 2.0E-94
blast AAF39983 Hypothetical protein W06H8.6 [Caenorhabditis elegans] ref|NP_504596.2| W06H8.6 [Caenorhabditis elegans] 2.0E-84
blast CAE71849 Hypothetical protein CBG18891 [Caenorhabditis briggsae] 1.0E-79
blast CAE71849 Hypothetical protein CBG18891 [Caenorhabditis briggsae] 1.0E-71
Sequence
Target Sequence 
>C. ELEGANS:184030_AT
gtcatctgcggagcacctcagaaacaagaggagcgcggcgcatcgaccgatttcagtgga
atgatgtttggcgacgaattcgagatggaggaggccgagacaaagacctggtcttggtcg
tctggagattcaattctcgattctgttcaagtatgtgcattgggctctcccactcttttc
ccagaatttcttaattggggcgccgaacagactaaacttcaaagttggtgtctgcgtctc
cgtctctctagtcacgagacttgtttatcgggccgtttctctattctctctcctcttcta
attctgtctcaccgacttcataatcgttggcaggaggattcgaaatccaactcaatggac
gctttgttcaagtggtcctcgtcgtgctctgacgcagcctacaacgcaccggtctccaac
tcattcggtggatgggctgactcttcgccactttctggtgatggactcttcggtctctcg
gacgatacgacttcttcgtggtcccacggagccactggcttcgacatgtgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATCTGCGGAGCACCTCAGAAAC 373 467 586 Antisense
AAGACCTGGTCTTGGTCGTCTGGAG 449 151 688 Antisense
TCAAGTATGTGCATTGGGCTCTCCC 102 633 732 Antisense
TTCAAAGTTGGTGTCTGCGTCTCCG 337 683 803 Antisense
GACTTGTTTATCGGGCCGTTTCTCT 305 371 843 Antisense
AATTCTGTCTCACCGACTTCATAAT 302 177 885 Antisense
ACGCTTTGTTCAAGTGGTCCTCGTC 2 93 944 Antisense
CACCGGTCTCCAACTCATTCGGTGG 401 199 992 Antisense
TCTTCGGTCTCTCGGACGATACGAC 553 617 1052 Antisense
GGACGATACGACTTCTTCGTGGTCC 640 519 1065 Antisense
GAGCCACTGGCTTCGACATGTGGGG 411 385 1094 Antisense
Sequence Source Affymetrix Proprietary Database