[Home] | [Total List]

[184029_at]

Description C16C4.7 /REP_DB=WormBase Gene ID /WP=CE08203 /TR=O16549 /GB=AAB93653.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 43.7
(-0.8)
A 		20.1
(-2.4)
A 		11.7
(-3)
A 		100.2
(3)
M 		89
B 26.2
(-3)
A 		37.5
(-1.2)
A 		63.9
(3)
A 		52.6
(1.2)
A 		38
C 49.3
(-0)
A 		9.7
(-2.9)
A 		8.6
(-3)
A 		90.3
(3)
A 		82
avr 39.7
(-1.2) 		22.4
(-3) 		28.1
(-2.4) 		81
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 38.7
(0.1)
A 		15.3
(-1.9)
A 		31.2
(-0.5)
A 		2.7
(-3)
A 		57.6
(1.8)
A 		72
(3)
A 		69
B 28
(-2.3)
A 		44.3
(1.2)
A 		52.6
(3)
A 		50.2
(2.5)
A 		42.8
(0.9)
A 		24.6
(-3)
A 		28
C 38.2
(0.9)
A 		52.6
(2.8)
A 		7.4
(-3)
A 		45
(1.8)
A 		9.6
(-2.7)
A 		54.4
(3)
A 		47
avr 35
(-1.6) 		37.4
(-0.9) 		30.4
(-3) 		32.6
(-2.3) 		36.7
(-1.1) 		50.3
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.9
(3)
A 		4.4
(-2.4)
A 		3.1
(-3)
A 		14.7
(2.4)
M 		13
B 8.4
(-3)
A 		9.3
(-2.2)
A 		14.8
(3)
A 		11.2
(-0.4)
A 		6
C 16.3
(3)
A 		2.8
(-3)
A 		3
(-2.9)
A 		15.2
(2.5)
A 		14
avr 13.5
(2.9) 		5.5
(-3) 		7
(-1.9) 		13.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.1
(-0.7)
A 		5.4
(-1.3)
A 		6.8
(-0.8)
A 		0.7
(-3)
A 		17.4
(3)
A 		17.5
(3)
A 		17
B 9.7
(-2.6)
A 		14.8
(1.1)
A 		12.8
(-0.4)
A 		13.3
(0)
A 		17.4
(3)
A 		9.2
(-3)
A 		8
C 14.2
(1.5)
A 		16.1
(2.2)
A 		1.9
(-3)
A 		9
(-0.4)
A 		3.1
(-2.6)
A 		18.2
(3)
A 		16
avr 10.3
(-0.6) 		12.1
(0.8) 		7.2
(-3) 		7.7
(-2.6) 		12.6
(1.2) 		15
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4086
Sequence Type Exemplar sequence
Representative Public ID C16C4.7 NCBI
Target Description C16C4.7 /REP_DB=WormBase Gene ID /WP=CE08203 /TR=O16549 /GB=AAB93653.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061698 NCBI Caenorhabditis elegans C16C4.7 (C16C4.7) mRNA, complete cds. 11/11 None
C16C4.7 ENSEMBL cdna:known chromosome:CEL140:II:1858394:1861407:1 gene:C16C4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C16C4.7
Entrez Gene 182661 Entrez gene
SwissProt O16549 EMBL-EBI
WormBase CE08203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93653 Hypothetical protein C16C4.7 [Caenorhabditis elegans] ref|NP_494099.1| C16C4.7 [Caenorhabditis elegans] 1.0E-166
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494099.1 4 102-124,131-153,210-232,319-341
C16C4.7 4 102-124,131-153,210-232,319-341
Sequence
Target Sequence 
>C. ELEGANS:184029_AT
cttccttcgacatctgatctcaatttgtcgaatttcaacgttttcccgatctagaattcg
attttcgtattctagaatttggctccatatttcaatttttgactcaaatattccatttat
ggccgtattccaacactcaacatgtcaagccatagtttcaaattcattgataattgtatt
ccttttcctagggacacttcacaatttcatattcgaaaaattatttttgttccgaaatcc
agtgacaattcctctcaaaaaatttccaaaatatccaatttctagattatatccgcaatt
tttcattaaaaattgtttattttccgtcaaaatttctctctgtcgaagccagcatctggt
ccttttcgtcctttttctctgcttttatggagaatttcgtcgccaaatccgtggaatttc
cctttttccgtcgttcatccaatatcagccgagattttcgccggaaaatcctttgttctt
ctttgaggcttccattggaacatttctgtgtttattgatttctccagcgattcctgtagt
tccgcagcttggccggttaatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCTTCGACATCTGATCTCAATT 678 217 495 Antisense
ATGGCCGTATTCCAACACTCAACAT 106 53 613 Antisense
TATTCCTTTTCCTAGGGACACTTCA 240 663 671 Antisense
TTCCGTCAAAATTTCTCTCTGTCGA 523 697 816 Antisense
CGAAGCCAGCATCTGGTCCTTTTCG 678 249 838 Antisense
CGTCCTTTTTCTCTGCTTTTATGGA 568 237 861 Antisense
CTTTTTCCGTCGTTCATCCAATATC 348 223 916 Antisense
TCGCCGGAAAATCCTTTGTTCTTCT 598 597 952 Antisense
GTTCTTCTTTGAGGCTTCCATTGGA 290 443 969 Antisense
TCTCCAGCGATTCCTGTAGTTCCGC 454 609 1015 Antisense
TTCCGCAGCTTGGCCGGTTAATCGG 425 695 1034 Antisense
Sequence Source Affymetrix Proprietary Database