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[184028_at]

Description Y38F1A.4 /REP_DB=WormBase Gene ID /WP=CE21609 /TR=Q9XWM4 /GB=CAA21629.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 63      4grp_high_8_8 > 19      6grp_total > 01      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 87.9
(-0.4)
P 		111.9
(1.4)
P 		54.5
(-3)
P 		132
(3)
P 		78
B 98.2
(3)
P 		83
(0.9)
P 		54.5
(-3)
P 		97.6
(2.9)
P 		44
C 120.1
(2.3)
P 		105.4
(1.1)
P 		56.8
(-3)
P 		128.1
(3)
P 		71
avr 102.1
(1.4) 		100.1
(1.2) 		55.3
(-3) 		119.2
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 94.6
(2.4)
P 		86.2
(0.7)
P 		86.7
(0.8)
P 		69.4
(-2.7)
A 		97.6
(3)
A 		67.8
(-3)
P 		30
B 81.9
(-1.4)
P 		100.7
(3)
P 		75
(-3)
P 		85.4
(-0.6)
M 		89.6
(0.4)
A 		88.1
(0.1)
P 		26
C 55.8
(-3)
P 		148.2
(3)
P 		61.2
(-2.6)
A 		67.9
(-2.2)
A 		77.4
(-1.6)
A 		63.5
(-2.5)
P 		92
avr 77.4
(-2.3) 		111.7
(3) 		74.3
(-2.8) 		74.2
(-2.8) 		88.2
(-0.7) 		73.1
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 32
(3)
P 		24.3
(0.4)
P 		14.2
(-3)
P 		19.3
(-1.3)
P 		18
B 31.3
(3)
P 		20.5
(-0.5)
P 		12.6
(-3)
P 		20.8
(-0.4)
P 		19
C 39.7
(3)
P 		30.3
(0.2)
P 		19.8
(-3)
P 		21.6
(-2.5)
P 		20
avr 34.3
(3) 		25
(0) 		15.5
(-3) 		20.6
(-1.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 17.4
(-2.6)
P 		30.6
(3)
P 		18.9
(-2)
P 		17.6
(-2.5)
A 		29.4
(2.5)
A 		16.5
(-3)
P 		14
B 28.5
(0.4)
P 		33.5
(2)
P 		18.2
(-3)
P 		22.6
(-1.5)
M 		36.4
(3)
A 		32.9
(1.8)
P 		18
C 20.7
(-1.7)
P 		45.2
(3)
P 		15.6
(-2.6)
A 		13.7
(-3)
A 		25
(-0.8)
A 		21.3
(-1.6)
P 		32
avr 22.2
(-1.5) 		36.4
(3) 		17.6
(-3) 		18
(-2.9) 		30.3
(1.1) 		23.6
(-1.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3139
Sequence Type Exemplar sequence
Representative Public ID Y38F1A.4 NCBI
Target Description Y38F1A.4 /REP_DB=WormBase Gene ID /WP=CE21609 /TR=Q9XWM4 /GB=CAA21629.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064361 NCBI Caenorhabditis elegans Y38F1A.4 (Y38F1A.4) mRNA, complete cds. 11/11 None
SNAP00000020279 ENSEMBL cdna:SNAP chromosome:CEL140:II:12965954:12980218:-1 11/11 None
GENEFINDER00000020298 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12966769:12969112:-1 11/11 None
Y38F1A.4 ENSEMBL cdna:known chromosome:CEL140:II:12966769:12969112:-1 gene:Y38F1A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12966765-12969109(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38F1A.4
Entrez Gene 189672 Entrez gene
SwissProt Q9XWM4 EMBL-EBI
WormBase CE21609 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21629 Hypothetical protein Y38F1A.4 [Caenorhabditis elegans] ref|NP_496762.1| Y38F1A.4 [Caenorhabditis elegans] 1.0E-147
blast CAA21629 Hypothetical protein Y38F1A.4 [Caenorhabditis elegans] ref|NP_496762.1| Y38F1A.4 [Caenorhabditis elegans] 1.0E-107
blast CAE59403 Hypothetical protein CBG02767 [Caenorhabditis briggsae] 7.0E-22
blast CAE59403 Hypothetical protein CBG02767 [Caenorhabditis briggsae] 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496762.1 7 15-37,54-76,91-113,133-152,172-194,206-225,240-262
Y38F1A.4 7 15-37,54-76,91-113,133-152,172-194,206-225,240-262
SNAP00000020279 5 12-34,54-76,97-116,126-148,161-183
GENEFINDER00000020298 7 15-37,54-76,91-113,133-152,172-194,206-225,240-262
Sequence
Target Sequence 
>C. ELEGANS:184028_AT
taatcgtggcgggacctattgcatatatctcttacaattccagaatttactctttcacca
ttgagaataaacgaaatgccaagcagtttgtatgctttttggccgacagtattattaaag
gagtttgcggagttttatccttcattggttacttgtcaatctggatttgggcaaaaaagc
agaaaaactttgatacaatcattcggcaggcattgccaattgcaacatttcaagtgctta
taatgacgattcagtttttgttggagctgccgaatgtgccaaaaatagatccaagggagc
ggatttttctagatgtgtgcttttcagcggcggctagcgtggtagtccccctatgcacca
tgatcggagaatcccgaaaacgcgacatgttctatagctcattctgctactgttactgtt
attgtgagccccgaccaccaccaccatcatcaagacatttaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCGTGGCGGGACCTATTGCATA 2 637 431 Antisense
TCCAGAATTTACTCTTTCACCATTG 651 589 469 Antisense
GTATGCTTTTTGGCCGACAGTATTA 575 455 520 Antisense
GGAGTTTTATCCTTCATTGGTTACT 537 507 559 Antisense
TTTTGTTGGAGCTGCCGAATGTGCC 450 675 686 Antisense
CTAGATGTGTGCTTTTCAGCGGCGG 433 223 739 Antisense
TCCCCCTATGCACCATGATCGGAGA 334 597 776 Antisense
GCGACATGTTCTATAGCTCATTCTG 525 289 812 Antisense
GCTCATTCTGCTACTGTTACTGTTA 419 301 827 Antisense
TGTTACTGTTATTGTGAGCCCCGAC 698 561 841 Antisense
ACCACCATCATCAAGACATTTACCG 437 85 870 Antisense
Sequence Source Affymetrix Proprietary Database