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[184027_at]

Description C01G5.9 /REP_DB=WormBase Gene ID /WP=CE25746 /TR=Q9TXQ7 /GB=AAD47116.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 34.7
(-2.6)
A 		26.9
(-3)
A 		37.7
(-2.4)
A 		135.4
(3)
P 		109
B 26.3
(-3)
A 		39.1
(1.6)
A 		43.1
(3)
P 		39.4
(1.7)
A 		17
C 13.6
(-3)
A 		15.4
(-2.9)
A 		26.1
(-2.2)
P 		110
(3)
P 		96
avr 24.9
(-3) 		27.1
(-2.8) 		35.6
(-2.1) 		94.9
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 22.5
(-3)
A 		31.2
(-2.4)
A 		77.2
(0.5)
P 		115.4
(3)
P 		89.3
(1.3)
P 		78.4
(0.6)
P 		93
B 30.4
(-3)
A 		33
(-2.9)
P 		85.7
(-0.1)
P 		146.8
(3)
P 		92.2
(0.2)
P 		71.8
(-0.9)
P 		116
C 3.6
(-3)
A 		40.1
(-1.7)
P 		27
(-2.2)
A 		169.2
(3)
P 		100.9
(0.5)
P 		52.4
(-1.2)
P 		166
avr 18.8
(-3) 		34.8
(-2.2) 		63.3
(-0.9) 		143.8
(3) 		94.1
(0.6) 		67.5
(-0.7) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.6
(-0.1)
A 		5.8
(-3)
A 		9.8
(-1.3)
A 		19.8
(3)
P 		14
B 8.4
(-3)
A 		9.7
(1.9)
A 		10
(3)
P 		8.4
(-3)
A 		2
C 4.5
(-3)
A 		4.4
(-3)
A 		9.1
(-1)
P 		18.5
(3)
P 		14
avr 8.5
(-1.7) 		6.6
(-3) 		9.6
(-1) 		15.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 4.1
(-3)
A 		11.1
(-1.3)
A 		16.8
(0)
P 		29.3
(3)
P 		27
(2.5)
P 		19.1
(0.6)
P 		25
B 10.6
(-3)
A 		11
(-2.9)
P 		20.8
(-0.8)
P 		38.9
(3)
P 		37.5
(2.7)
P 		26.8
(0.4)
P 		28
C 1.3
(-3)
A 		12.2
(-1)
P 		6.9
(-2)
A 		34
(3)
P 		32.7
(2.8)
P 		17.5
(-0)
P 		33
avr 5.3
(-3) 		11.4
(-1.7) 		14.8
(-1) 		34.1
(3) 		32.4
(2.6) 		21.1
(0.3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11111
Sequence Type Exemplar sequence
Representative Public ID C01G5.9 NCBI
Target Description C01G5.9 /REP_DB=WormBase Gene ID /WP=CE25746 /TR=Q9TXQ7 /GB=AAD47116.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068590(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068590 NCBI Caenorhabditis elegans C01G5.9 (C01G5.9) mRNA, complete cds. 10/11 None
SNAP00000022677 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6520318:6522202:1 11/11 None
GENEFINDER00000022691 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6519959:6522202:1 10/11 None
C01G5.9 ENSEMBL cdna:known chromosome:CEL140:IV:6519959:6522202:1 gene:C01G5.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6519964-6522208(+) 97.9 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G5.9
Entrez Gene 182076 Entrez gene
SwissProt Q9TXQ7 EMBL-EBI
WormBase CE34649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47116 Hypothetical protein C01G5.9 [Caenorhabditis elegans] ref|NP_500991.2| C01G5.9 [Caenorhabditis elegans] 0.0
blast A88711 protein C01G5.6 [imported] - Caenorhabditis elegans 0.0
blast CAE61525 Hypothetical protein CBG05428 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.5E-45
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.3E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500991.2 1 7-29
C01G5.9 1 7-29
GENEFINDER00000022691 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184027_AT
gtactcaagctgggtggcaacggttgatttggacgaaaggatcatgatgattgatgagaa
atctactcttttagattatatcaggttttcattttgcttacttttttatccaactctcta
tattgacagaaattgcaatgatcataaaatctctgaactacgttttcgttgtcaatggac
tcttcgatattctgaaatttcttctggtgctcctcaaattgagaatcttccaatgattac
ttggcataacaccagccacgtggcaccgcagaatcatactacaaaatcgattattcggtc
ccgaaatgttgactcgatgggtgtgcacggagttcaaaagttccgaaatccgatctatgg
agtccgacttgtggagccagaaattgcagttgtccgacactatcgattgattaaaggatg
gagtttctttttaagagaagccgaatcttttggcaactttttccattttcaactatctcc
tggtttatctagtcgtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTCAAGCTGGGTGGCAACGGTT 595 457 906 Antisense
CTTACTTTTTTATCCAACTCTCTAT 51 221 1002 Antisense
GTCAATGGACTCTTCGATATTCTGA 666 463 1076 Antisense
TCTGAAATTTCTTCTGGTGCTCCTC 120 609 1096 Antisense
TTGGCATAACACCAGCCACGTGGCA 221 709 1146 Antisense
GTGGCACCGCAGAATCATACTACAA 488 491 1165 Antisense
TGTTGACTCGATGGGTGTGCACGGA 465 563 1212 Antisense
ATGGAGTCCGACTTGTGGAGCCAGA 120 53 1262 Antisense
GAGCCAGAAATTGCAGTTGTCCGAC 227 385 1279 Antisense
TTTCCATTTTCAACTATCTCCTGGT 4 671 1365 Antisense
ATCTCCTGGTTTATCTAGTCGTATT 439 33 1380 Antisense
Sequence Source Affymetrix Proprietary Database